DreALTD0002328-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000075545 | ZNF646 (2 of 2)
Description
zinc finger protein 646 [Source:HGNC Symbol;Acc:HGNC:29004]
Coordinates
chr19:5229974-5230908:+
Coord C1 exon
chr19:5229974-5230675
Coord A exon
NA
Coord C2 exon
chr19:5230816-5230908
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TTTCTACATGTCTATTACAGGTA
3' ss Score
10.15
Exon sequences
Seq C1 exon
CTCCTCCCCCAGAATATGAATGCGATGGGTGCTCTCAAGTCTTTCACGCAACCACAGATCTGGCCTCGCATAACTGCAGTGCCCAGCTTCCTTCATCTTCTGCCTCTCTCAACAGCTCTAATATGAGCATGGATGCAGGTGACCTGGGATCTCCAGAGCGTGAAGAACGTCCCTTTGCCTGTGACCTTTGCGGCTGCTCATACAAGCATGCTAGCAGTCTGCTCAACCACAAAAATACACACAAAATTGGCAACTTCAACTGCTCCTATTGTGACAAGCCGTACACCAACTACATGGCCCTCCGCAACCACATGCGTATCCACACGCAGAAGAAGCGGCATATCTGCACAACCTGTGGAAAGGCTTTCCGACTGGCCCGCTTCCTTCGGAACCACCAGAGAGTCCACGAGGAGGGACACACCCGATTTGGCTGCCCCACCTGTGGGAAGAGCTTCCAGGGGCGTTCTGGGCTGGCCAGGCACCGCTGCGGTGACAACCAG
Seq A exon
NA
Seq C2 exon
GTATATGATCTCCAATCCGGCTTCCTCGGGACCATACGCGTGCCGGAATTTGGATTTTTCTGAAGTTTGGACAGTATGATTAGTGGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075545-10-8,11-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=10.3),PF121713=zf-C2H2_jaz=WD(100=9.8),PF121713=zf-C2H2_jaz=WD(100=10.7),PF0115514=HypA=WD(100=26.9),PF134651=zf-H2C2_2=WD(100=10.7),PF0009621=zf-C2H2=WD(100=9.4)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACAACCTGTGGAAAGGC
R:
AGGAAGCCGGATTGGAGATCA
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]