DreEX6071703 @ danRer10
Exon Skipping
Gene
ENSDARG00000075545 | ZNF646 (2 of 2)
Description
zinc finger protein 646 [Source:HGNC Symbol;Acc:HGNC:29004]
Coordinates
chr19:5229589-5232240:+
Coord C1 exon
chr19:5229589-5230740
Coord A exon
chr19:5230816-5230908
Coord C2 exon
chr19:5231997-5232240
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTCTACATGTCTATTACAGGTA
3' ss Score
10.15
5' ss Seq
CAGATAAGT
5' ss Score
2.68
Exon sequences
Seq C1 exon
TCGCATAACTGCAGTGCCCAGCTTCCTTCATCTTCTGCCTCTCTCAACAGCTCTAATATGAGCATGGATGCAGGTGACCTGGGATCTCCAGAGCGTGAAGAACGTCCCTTTGCCTGTGACCTTTGCGGCTGCTCATACAAGCATGCTAGCAGTCTGCTCAACCACAAAAATACACACAAAATTGGCAACTTCAACTGCTCCTATTGTGACAAGCCGTACACCAACTACATGGCCCTCCGCAACCACATGCGTATCCACACGCAGAAGAAGCGGCATATCTGCACAACCTGTGGAAAGGCTTTCCGACTGGCCCGCTTCCTTCGGAACCACCAGAGAGTCCACGAGGAGGGACACACCCGATTTGGCTGCCCCACCTGTGGGAAGAGCTTCCAGGGGCGTTCTGGGCTGGCCAGGCACCGCTGCGGTGACAACCAGGTAGGCAAGGAGGGCATGAGGAAGGACACTTCAAGCACAAGAGAGGGAGAGGATTACCGGTTCAC
Seq A exon
GTATATGATCTCCAATCCGGCTTCCTCGGGACCATACGCGTGCCGGAATTTGGATTTTTCTGAAGTTTGGACAGTATGATTAGTGGAGACCAG
Seq C2 exon
AGATGTGACCAGTGTGGTCGTTCTTATCGGCATGCTAGCTCACTTCTTAATCACAAAAACACCCACACCGTCGGCATCTACCACTGCGCTGTGTGCCTCAAGACCTACTCCAATCTGCTCGCACTCAAGAATCACCGTCGCATTCATTCTGAAACTCGGCGGCACCGCTGCCCAGAGTGCGGCAAAGCTTTCCGCGTCTCTTCCCAATTACAAAATCACCGCCGTATCCACCTAAAGGAGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075545-'11-9,'11-8,13-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.301 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=6.0),PF0009621=zf-C2H2=WD(100=6.0),PF138941=zf-C2H2_4=WD(100=6.5),PF121713=zf-C2H2_jaz=WD(100=6.0),PF121713=zf-C2H2_jaz=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF0009621=zf-C2H2=WD(100=5.7)
A:
NO
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAACCAGGTAGGCAAGGA
R:
GTAGGTCTTGAGGCACACAGC
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]