DreINT0023206 @ danRer10
Intron Retention
Gene
ENSDARG00000075545 | ZNF646 (2 of 2)
Description
zinc finger protein 646 [Source:HGNC Symbol;Acc:HGNC:29004]
Coordinates
chr19:5229589-5230908:+
Coord C1 exon
chr19:5229589-5230740
Coord A exon
chr19:5230741-5230815
Coord C2 exon
chr19:5230816-5230908
Length
75 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TTTCTACATGTCTATTACAGGTA
3' ss Score
10.15
Exon sequences
Seq C1 exon
ACACAAGTGTGAGGAGTGTGGGAAGGCCTTCAAGATTCAGAAGCAGTTAATAAATCATCTACGCCTGCACGAAGAGCACAGAGCAAAGACTGGAGAGCGAGACCAAAGAGTTCAAAGCATGTCTCATCCCAATGGAGCCCACTATGAAGGAGGCCCTTCGCAGCTACAAGCTATGAGGATGGGTGAACCCAAAATGCAGAATCCTCCCATGAACCCCAATTATGGTCAACCTCAAGATTTCAAAAAACCATACGCGGGGGCGAGGGCACAGCAGATTGATGATGGCAGCGGTCGCCGCCCCTTTGCTTGCGATCAGTGTGGACGTACTTACCGTCATGCTGGCAGTCTGGCCAATCATAAGAACCTTCATAAGATCGGCGAATACCACTGCAATGTGTGCAATTCCACTTATCCAAATCGACTGGCAATGAAGAATCACCTTCGAATGCATTTCGCTCTCAAGAAATTTACCTGCACTGAATGTGGAAGGGGCTTCAGGAACCAGAGGCAGCTTGAAACGCACACCAGCAACCAGCTCTGCAAAGATATTCCTGTTCCTCTTCCTGGTACTAGCATTCAGACTGCTCCTCCTCCCCCAGAATATGAATGCGATGGGTGCTCTCAAGTCTTTCACGCAACCACAGATCTGGCCTCGCATAACTGCAGTGCCCAGCTTCCTTCATCTTCTGCCTCTCTCAACAGCTCTAATATGAGCATGGATGCAGGTGACCTGGGATCTCCAGAGCGTGAAGAACGTCCCTTTGCCTGTGACCTTTGCGGCTGCTCATACAAGCATGCTAGCAGTCTGCTCAACCACAAAAATACACACAAAATTGGCAACTTCAACTGCTCCTATTGTGACAAGCCGTACACCAACTACATGGCCCTCCGCAACCACATGCGTATCCACACGCAGAAGAAGCGGCATATCTGCACAACCTGTGGAAAGGCTTTCCGACTGGCCCGCTTCCTTCGGAACCACCAGAGAGTCCACGAGGAGGGACACACCCGATTTGGCTGCCCCACCTGTGGGAAGAGCTTCCAGGGGCGTTCTGGGCTGGCCAGGCACCGCTGCGGTGACAACCAGGTAGGCAAGGAGGGCATGAGGAAGGACACTTCAAGCACAAGAGAGGGAGAGGATTACCGGTTCAC
Seq A exon
GTGAGTTTACGTCTGTTGTTCGTGATTTTTGAAGTGAACTAGTAAAGATCACAGGTTTCTACATGTCTATTACAG
Seq C2 exon
GTATATGATCTCCAATCCGGCTTCCTCGGGACCATACGCGTGCCGGAATTTGGATTTTTCTGAAGTTTGGACAGTATGATTAGTGGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075545:ENSDART00000151324:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.301 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=6.0),PF0009621=zf-C2H2=WD(100=6.0),PF138941=zf-C2H2_4=WD(100=6.5),PF121713=zf-C2H2_jaz=WD(100=6.0),PF121713=zf-C2H2_jaz=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF0009621=zf-C2H2=WD(100=5.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACACCCGATTTGGCTG
R:
AGGAAGCCGGATTGGAGATCA
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]