DreALTD0003656-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000007125 | asb6
Description
ankyrin repeat and SOCS box containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-338]
Coordinates
chr8:6870150-6875223:-
Coord C1 exon
chr8:6875123-6875223
Coord A exon
NA
Coord C2 exon
chr8:6870150-6870283
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ATATCTGTGCTGTTTTCCAGCGA
3' ss Score
8.95
Exon sequences
Seq C1 exon
ATTTTGTTTTAATGGAACGCTTTTATTTTGCAACACTTTCCCCGACGTACTTTTATTTTGAAGGTAACATGTGGGAAGAATTACTTCCGGTTCTACAGTGG
Seq A exon
NA
Seq C2 exon
CGAGAAGAGACTGTGAGTCAGCAGGACCCGAACATGCCTTTCCTCCATGGCTTCAGGAGGATTGTTTACGAGTATCAGCCACTGGTGGACGCGGTGCTTTGTGTGCTGGGGACAGACGGAGAAAACCAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007125-0-5,1-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.059
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGGAACGCTTTTATTTTGCAACA
R:
CTGCGCTGGTTTTCTCCGTC
Band lengths:
226-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]