DreINT0034015 @ danRer10
Intron Retention
Gene
ENSDARG00000007125 | asb6
Description
ankyrin repeat and SOCS box containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-338]
Coordinates
chr8:6874575-6875173:-
Coord C1 exon
chr8:6875123-6875173
Coord A exon
chr8:6874607-6875122
Coord C2 exon
chr8:6874575-6874606
Length
516 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TGTTCATTGTTATTAAGCAGTTG
3' ss Score
3.3
Exon sequences
Seq C1 exon
TTTTATTTTGAAGGTAACATGTGGGAAGAATTACTTCCGGTTCTACAGTGG
Seq A exon
GTAAGAAAAATGTAATATCAAACAGTAGAATAGACGAGTATTACATTTGTGACCTGAATATTTAAACGCATAACATATATGTGGGGAAAATGAGGAACCTCGAATTTCGGATTAGCCGTTAATCATAATAGTAAAAGGTAAACAGCTTGCAAACAACTAGAGCCCACCACATTGAACATCCAACAATATGAATCTAACAGAATGAATAAATTTGTATTCTAGGTTTATGTTCTATTACATTAGGCGGTTTAATTGTAAATATATCGTACTAAGTGTTAAATATTAGTCAACATTGTGATGCTAACTATGCTAGCAGTCAAATTGGCCGCTCTTTTTAGAGGTGTGGTAACGTTACATCTGATAAACTGAACCTCTGACGTGAATGTGCATTATTTAAACACTTGAAGAGGAATGTTACTTATACATACACCGTAAATATATAGAGTATATTATGTATGTATAATTTCTAATTTATTACACGGTTTAACAGATTGATTGTTCATTGTTATTAAGCAG
Seq C2 exon
TTGAGGTCTTCAATGGACTCTAATGTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007125:ENSDART00000014915:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]