DreEX0015179 @ danRer10
Exon Skipping
Gene
ENSDARG00000007125 | asb6
Description
ankyrin repeat and SOCS box containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-338]
Coordinates
chr8:6870150-6875173:-
Coord C1 exon
chr8:6875123-6875173
Coord A exon
chr8:6874575-6874632
Coord C2 exon
chr8:6870150-6870283
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTATTACACGGTTTAACAGATT
3' ss Score
6.27
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTTTATTTTGAAGGTAACATGTGGGAAGAATTACTTCCGGTTCTACAGTGG
Seq A exon
ATTGATTGTTCATTGTTATTAAGCAGTTGAGGTCTTCAATGGACTCTAATGTACTGAG
Seq C2 exon
CGAGAAGAGACTGTGAGTCAGCAGGACCCGAACATGCCTTTCCTCCATGGCTTCAGGAGGATTGTTTACGAGTATCAGCCACTGGTGGACGCGGTGCTTTGTGTGCTGGGGACAGACGGAGAAAACCAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007125_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.059
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTTCCGGTTCTACAGTGG
R:
GTTTTCTCCGTCTGTCCCCAG
Band lengths:
147-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]