DreALTD0014224-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000099954 | plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2752]
Coordinates
chr12:4900700-4907224:+
Coord C1 exon
chr12:4900700-4900841
Coord A exon
chr12:4900842-4900944
Coord C2 exon
chr12:4906586-4907224
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CAACTCTCTTTCTCCTCTAGGGA
3' ss Score
11.51
Exon sequences
Seq C1 exon
TGGATCAAGGGCAAGATCGCACATACATTAAAAGCCCTGCAGAAGCGCTACATCACCACAGACACGGCGGTCACCAGTGAGGATCTAGAAGCAAACCTGCTGTGCTGTGCTTTGGAGGCGGTTTTCATCCATGGAATCAAGA
Seq A exon
GTAAGTTCATCCGATCTGATGGAGGTCAAGTGCGCAAAGGAGGATCTCGAGGAGCGCTGCCTCAGCCAGTCTTCTGGGCTCTGTTGAAGACTGTCACCCACAG
Seq C2 exon
GGATGTAGTTCAAGAACTGGAACGTCTAAGCTTCATTAACTCTGATGTGGGCCGCTGCAGAGCATGGGTCCGGCTGGCGCTGAACGACGGGCTTCTGGAGTGTTACCTGACCTCGCTGCTTCGTGAAAACTCCAAAATGAGCACCTACTATCAGCCCGGGGCTCTTCTGCTGGACCCGGAGGACCGAGAGGTGCTTCTCACCCTCCTGCAGGGCTTGGCTTCACTGACCTTCCAGCTTTCCTACAAATCTGCTGTGCTCAATGAATGGACCAACACGCCGCTGGTCCTTGCAGGTCTTTGCCCTCCAACTCCTGCCGACGAGCAGCATCTTGGTCCCAAACGCAAGGAGTCCTGGGATACGGTGTCCCAGTCATCCGGCGGCTCTGGAGGCTCGGATTGGACTCCCGAATCGCTCCAGAGGGAGACGAGGAGAGATCAGATTGATGGCTGTGATCCCAGCACTCCGCTGACCTCCTCAAACCTAAGTCTGGACACCGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099954-3-4,4-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.519
Domain overlap (PFAM):
C1:
PF0275914=RUN=PU(36.8=59.8)
A:
NA
C2:
PF0275914=RUN=PD(62.4=38.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAAGGGCAAGATCGCACA
R:
GTAACACTCCAGAAGCCCGTC
Band lengths:
246-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]