GgaALTD1017669-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000000201 | PLEKHM1
Description
pleckstrin homology domain-containing family M member 1 [Source:RefSeq peptide;Acc:NP_001026095]
Coordinates
chr27:1596257-1597837:-
Coord C1 exon
chr27:1597590-1597837
Coord A exon
NA
Coord C2 exon
chr27:1596257-1596880
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGTGT
5' ss Score
6.56
3' ss Seq
TTCTTCCCACCCCCCCCCAGGAA
3' ss Score
10.38
Exon sequences
Seq C1 exon
CTGATCAAGAAGCAGCTGGTGAGCTCCATCAAGGCCCTGCAGAAGCAGTACGTCTCCTCGGATGCGGTGGTGACCAGCGATGATGGGAACGCCAACACGCTGTGCTGTGCCCTGGAGGCCGTCTTTGTGCACGGGCTGAAGGCGAAGCACATCAGGACGGAGGCGGGGGGCAAAGGGAGGAAAGCAGGCGGCCGGCTGCCCCTCCCCCAGCCCGTCTTCTGGGCCCTGCTGAAGGGCATCACACACCG
Seq A exon
NA
Seq C2 exon
GAACATCATCTCGGAGCTGGAACAACTCATTTTCATCACCACGGACGTGGGCCGCTGCCGGGCCTGGCTGAGGCTGGCTCTGAACGATGGGTTGGTGGAGTGCTACCTGAAGCTGCTGCTGCGCGAGCGCTCCCGCCTGCCCGAGTTCTACCAACCCACAGCGCTGCTCCTGGACGCCGAGGAGTGTGAATTCCTCCTGAGCTACCTGCAGGGCTTGTCGTCCCTCACCTTCCAGCTGTCCTACAAGTCGGCGGTGCTCAACGAGTGGACGGTCACCCCGCTGTCCCTCTCAGGGCTGTGCCCCGTATCCGAGCTGCTGGAGCCCCCGGCGGCCGAACCTCAAAGAAAAGCGTCTCTGGGTTCCATCTCCCAATCTTCGGGCTCTGATGAGATTGAAATCCAACCCCCGGCGCTGCCCATCTGCAAGGCGGGCGACAAACCCAAGCGGACGTCGTCCTCGCTGAGCCTGAACACCACGGGTTCGTCACAGCTGTCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000201-10-9,11-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.392
Domain overlap (PFAM):
C1:
PF0275914=RUN=PU(37.3=60.2)
A:
NA
C2:
PF0275914=RUN=PD(61.9=39.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGAAGCAGCTGGTGAGC
R:
CCACCAACCCATCGTTCAGAG
Band lengths:
343-813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]