HsaALTD1044942-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000225190 | PLEKHM1
Description
pleckstrin homology and RUN domain containing M1 [Source:HGNC Symbol;Acc:HGNC:29017]
Coordinates
chr17:45475100-45478147:-
Coord C1 exon
chr17:45478101-45478147
Coord A exon
chr17:45477900-45478100
Coord C2 exon
chr17:45475100-45475726
Length
201 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
CGTCTGTTCTCCCTTCCCAGACA
3' ss Score
10.39
Exon sequences
Seq C1 exon
GTCATCAAGAAGAAGCTGGTGGGATCCGTGAAGGCCTTGCAGAAGCA
Seq A exon
GTACGTGTCCCTGGACACGGTGGTCACTAGTGAAGACGGAGATGCCAACACCATGTGCAGCGCCCTGGAGGCCGTATTTATCCATGGCCTGCACGCCAAGCACATCCGAGCTGAGGCCGGAGGAAAAAGGAAGAAAAGTGCCCACCAGAAGCCTCTGCCCCAGCCTGTCTTCTGGCCCCTCCTGAAAGCTGTCACCCACAA
Seq C2 exon
ACACATCATCTCAGAGTTGGAGCACCTGACGTTTGTCAACACGGATGTGGGCCGCTGCCGGGCATGGCTGCGGCTGGCCCTGAACGATGGCCTGATGGAGTGCTACCTGAAGCTGCTGCTGCAGGAGCAGGCCCGCTTGCATGAGTACTACCAGCCCACCGCCCTGCTCCGGGATGCTGAGGAGGGCGAGTTCCTCCTTAGCTTCCTGCAGGGCCTCACGTCCTTGTCCTTCGAACTCTCCTACAAGTCTGCCATCTTAAATGAGTGGACGCTCACCCCATTGGCCCTGTCTGGGCTTTGCCCGCTTTCTGAGCTGGACCCTCTCTCTACCTCTGGTGCAGAACTACAGCGGAAGGAATCTCTGGATTCCATTTCCCATTCTTCAGGCTCTGAAGACATCGAAGTCCATCACTCGGGCCATAAGATACGGAGGAACCAGAAGCTGACTGCCTCCTCCCTCAGCCTGGACACGGCCAGTTCATCCCAGCTGTCCTGCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000225190-5-13,6-13,7-13,8-13-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.339
Domain overlap (PFAM):
C1:
PF0275914=RUN=FE(13.3=100)
A:
NA
C2:
PF0275914=RUN=PD(61.9=39.5)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGCTGGTGGGATCCG
R:
GGCAGACTTGTAGGAGAGTTCG
Band lengths:
293-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains