DreALTD0016969-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000063300 | si:ch1073-385i9.2
Description
si:ch1073-385i9.2 [Source:ZFIN;Acc:ZDB-GENE-131127-512]
Coordinates
chr16:52080571-52081546:-
Coord C1 exon
chr16:52081357-52081546
Coord A exon
NA
Coord C2 exon
chr16:52080571-52080742
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GGATCTTCTTCCTTCTGCAGAGT
3' ss Score
9.09
Exon sequences
Seq C1 exon
GGGAAGGGAAGGGTATGACGATCCATGGCGATATTACCCTGGTTATGACTCCAGCTTTGACGATGACTCTCGGAGACGTGACCCATATGCTGATGATTTTGACCGGCGTTCGGTTCACAGTGAACAATCAGCACACAGTGTGCATTCATCACACAGTCGACGTAGTAGCTTCAGCTCACGGTCACAACAG
Seq A exon
NA
Seq C2 exon
AGTCAGGTTTACAGGAGTCAACCAGACTTGGTCAGCGCAGCCTACGATGCCACTGGCACCACTCTTCCAGCAGATTACACCTACAGCCAGTATCCTAACCCTTCAGATACTGTGAATTATGGTCAGGATCCTTATAATTCTGCTGACAACACCTGGTCTGCACCAGAACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063300-7-7,8-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCTCACGGTCACAACAG
R:
AATCTGCTGGAAGAGTGGTGC
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]