DreALTD0021569-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000013990 | ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1919]
Coordinates
chr25:29001711-29007225:-
Coord C1 exon
chr25:29007088-29007225
Coord A exon
NA
Coord C2 exon
chr25:29001711-29001795
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
CGGATTTTGTTGTGTTTTAGGGT
3' ss Score
10.98
Exon sequences
Seq C1 exon
GATATTGAAGATCTAGACCACTATGAGATGAAAGAGGAACCAGTGGATGGGAAAAAGTCGGAGGACGATGGCATAGAGAAGGAGAACCTGGCCATTCTGGAGAAAATCCGCAAGAACCAGAGGCAGGACCACTTGAAC
Seq A exon
NA
Seq C2 exon
GGTGCGGTGTCCGGTTCAGTTCAGGCCTCCGACCGCCTCATGAAGGAACTCAGGGAGATCTATAGATCACAGAGTTATAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013990-6-6,7-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.612 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0017921=UQ_con=PU(10.9=58.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCTGGCCATTCTGGAGA
R:
CTGAGTTCCTTCATGAGGCGG
Band lengths:
109-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]