GgaALTD1024752-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000002989 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr10:3012500-3019648:-
Coord C1 exon
chr10:3019524-3019648
Coord A exon
chr10:3019508-3019523
Coord C2 exon
chr10:3012500-3012584
Length
16 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GTCTCTTTTGTTTGTTTCAGGGT
3' ss Score
12.46
Exon sequences
Seq C1 exon
GACATTGAAGATCTGGATCACTATGATATGAAGGAGGAGGAACCAGTTGACGGGAAGAAATCCGAGGATGAAGGCATTGAAAAAGAGAACCTTGCAATCTTAGAAAAAATCAGAAAAAATCAAAG
Seq A exon
GCAAGATCACTTAAAT
Seq C2 exon
GGTGCAGTCTCTGGGTCAGTTCAGGCTTCAGATCGACTTATGAAGGAACTCAGGGATATATATAGATCACAGAGCTATAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989-6-8,7-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=NA C2=0.172
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0017921=UQ_con=PU(10.9=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACCAGTTGACGGGAAGA
R:
TGAACTGACCCAGAGACTGCA
Band lengths:
111-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]