HsaALTD1023415-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin conjugating enzyme E2 Q2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr15:75873428-75876271:+
Coord C1 exon
chr15:75873428-75873552
Coord A exon
chr15:75873553-75873568
Coord C2 exon
chr15:75876187-75876271
Length
16 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CAGTGGCTTTTGTGTTTCAGGGT
3' ss Score
8.89
Exon sequences
Seq C1 exon
GATATAGAAGACTTAGATCACTATGAGATGAAGGAAGAAGAGCCTATTAGTGGGAAAAAGTCAGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAAAG
Seq A exon
GCAAGACCATTTAAAT
Seq C2 exon
GGTGCAGTGTCTGGGTCAGTGCAAGCTTCAGATAGACTTATGAAAGAGCTCAGGGACATATACAGATCACAGAGTTATAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-21-15,22-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=0.144
Domain overlap (PFAM):
C1:
PF0577317=RWD=PD(6.5=17.0)
A:
NA
C2:
PF0017921=UQ_con=PU(10.9=58.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAAAAAGTCAGAGGATGA
R:
CTTGCACTGACCCAGACACTG
Band lengths:
102-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains