DreEX0000443 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3462936-3470827:-
Coord C1 exon
chr25:3470441-3470827
Coord A exon
chr25:3466912-3467087
Coord C2 exon
chr25:3462936-3463013
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGGTTTGTGTTGATGTGCAGCTG
3' ss Score
6.35
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCCATGTCCCAGCTAACCGAGGCATCAGACCGCGAGCGAGAGCTAATGCTGCAGAACCGCACGCTTCAGGATGAGCTGAGCGGTGCTCGGGCCGAGCTGGAGCGCTTGCAGTGTCAGAGTCGGCAGGATGAGTCTCGGCTGGCGGAGGACAGAGACACCCTGCGGGAGAGACTGGAGGATGCCCGCAGAGACATGAAGCTAAGCGAGGAGGCCCTGGCCCAGACTGTCTTCCAGTATAACGGGCAGCTGAGCGCACTGAAGGCCGAATGCTCCGTCCTCAGTGCTAAATTGGAGCACGAGAGGCAGACGAGGCAGCAGCTGGAGGCTGAGGCTGAAGCTGGCAGAGCACGACTGCAGGCCGCCATACAGGAGGCAGAGAGATGTCAG
Seq A exon
CTGCAGGAGTCTGAGGAAACATACGTGCAGGCTGAGAGACGCATTGCTCAGCTGAAGAGCTCTCTGGATGATAAAGAGCGAGAGGCCTGCAGTAACGCTCACAAACTGGAGGAGGCGCTCTCTGCATCTGCAGGCAAAGAGCAGACCATCAGACAGCTGGAGGAGGCCGTGCAGAG
Seq C2 exon
GTCAGGAATCGTTTGGAGGATCTGGTCACAAACCTGCAGAGCAGTAAGATGACGCTAGAAGAGCAGCTCAACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768_MULTIEX3-3/9=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.557 C2=0.962
Domain overlap (PFAM):
C1:
PF149151=CCDC144C=PU(36.1=85.3)
A:
NO
C2:
PF150351=Rootletin=FE(19.3=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAAGCTAAGCGAGGAGGC
R:
GCGTCATCTTACTGCTCTGCA
Band lengths:
251-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]