BtaEX6063881 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17917813-17920666:-
Coord C1 exon
chr13:17920573-17920666
Coord A exon
chr13:17919494-17919606
Coord C2 exon
chr13:17917813-17917942
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTAAATTGTTTTTTTCTAAGTCT
3' ss Score
4.74
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GCTTGAAATTGAAAATGCCGAGTTACAAACTACAGTCAAAAAGCAAGCGGGCAAAATTGAACAGCTTCAGAAAAACCTGTTAAGTACAAGATCG
Seq A exon
TCTGAGGATGAAAAGGAACAATTAAAGAAATACATTGAATTAAAACAATCTCTGGAAAATAGCTTGGACCAAGAAAAGAAGAAAAACAGTGAGTTAGAAAAAGAGATTACTGG
Seq C2 exon
ATTTAAGAAACTCTTAAAAATGACAAGAAGGAAGTTAAATGAATATGAAAATGGAGAGCTTAGTTTCCATGGAGATTTAAAAACCAGTCAAACTGAAATGGATATTCAAATTAATAAGCTAAAACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'30-31,'30-30,31-31=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.344 A=0.263 C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAAATTGAAAATGCCGAGT
R:
TGAATATCCATTTCAGTTTGACTGGT
Band lengths:
202-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]