GgaEX0013382 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:26128671-26130446:+
Coord C1 exon
chr1:26128671-26128805
Coord A exon
chr1:26129777-26129889
Coord C2 exon
chr1:26130305-26130446
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTGAAAGTGT
3' ss Score
6.3
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATGCAAAAGCAGAATATGTTGGCTATGACATCAAAAGACTCACGCAATATGTGGGAGGAAGAACTGAAGTCAAGAGCCCACCTTGAAGATCGTCTTGCTCAACTTGATAGGGAAAAGGCTGAGCTCTTGGAACAG
Seq A exon
TGTGAGAGTGAAAGAAAGAAAGTGAAGAAGCTGGTAGAGTTGAAACGACCAGTTGAAGCACGTCTTGACCAGGAAATGAAAAGAAATATTGAACTGCAGAAAGAATGTCACAG
Seq C2 exon
GTGCAAGAGGCTTCTGAACAGAGCTGTGAAGAAACTAAGGATGTATGAGGCCAGAGAAAGAGAGTCCCAATTTAATTTCCAGGGAGAAATGAAGAACAGGTATTCTGAAATGGTGAATGAAGTTGGCAAATTAAGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.026 C2=0.146
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGACATCAAAAGACTCACGC
R:
TGCCAACTTCATTCACCATTTCA
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]