RnoEX6014804 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150557492-150562698:-
Coord C1 exon
chr4:150562605-150562698
Coord A exon
chr4:150560519-150560631
Coord C2 exon
chr4:150557492-150557621
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTTTAAAATTTTTTTCAAAGTCT
3' ss Score
4.64
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GCTTGAACTTGAAAATTCCAAGTTCAAAATTACAATAAAAACGCAATCAGAGGAAATTGAACAACTTCAGGAAAACCTGTCAAATGGGAATTTG
Seq A exon
TCTGAAGAGGATCAGGAAAAACTGAAGAAGCTTACGGAGTTGAAAGAGTCCCTGGAATATACTTTGGATCAAGAACAGAAGAGAAGCGACGCATTAGAAAAGGAACTGACAGA
Seq C2 exon
ATTTAAGGAAGTCTTAAAAATGACCAAAAAAGAATTAAGTGAATATGAAAACAGAGAACTTCATCTTCATCAAGATATGAAAAGCAGTCAACTTGAAATGGATGTCCCAGTTAATGCACTAGTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'40-38,'40-37,41-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=0.395 C2=0.386
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAACTTGAAAATTCCAAGTT
R:
TACTAGTGCATTAACTGGGACATCC
Band lengths:
218-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]