DreEX0000448 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3459015-3462178:-
Coord C1 exon
chr25:3462044-3462178
Coord A exon
chr25:3460965-3461077
Coord C2 exon
chr25:3459015-3459156
Length
113 bp
Sequences
Splice sites
3' ss Seq
ATTATTTTACTCTCTCTCAGATG
3' ss Score
9.56
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTGCAGAAGCAGAGTATGCTTTCCCATAATGCCCAGGACTCACAGGCGCTGTGGGAGGAGGAGCTAAAGAGTCGCTCTAGACTGGGACTCCGCCTCTCTGAGCTGGAGAAAGAGAAAGGAGAACTGACCAATCAG
Seq A exon
ATGGAGCTCGAGAAGAAAAAGGCCAAGAAGCTGTCGGAGCAGAAGAAGTCTGTGGACACTCGTCTGGAGCAGGAGATGCAGAGAAACACAGACCTCCAGAAAGAAATGTACAG
Seq C2 exon
GTTGAAGACCCTGCTGAAGACCGCTAAGAAGCAGTTGCGTGATGGGGGCGGTGGAGCTCTGGACTCTCCTCAGGGCAGCTTCAGAGCGGATGTGAGCCATCGTCTGGAGGCCGAGAGCTCCGTCAGCAGAATGAAGAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768_MULTIEX3-8/9=7-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=1.000 C2=0.938
Domain overlap (PFAM):
C1:
PF150351=Rootletin=FE(33.3=100)
A:
PF150351=Rootletin=FE(27.4=100)
C2:
PF150351=Rootletin=PD(11.1=31.2),PF150351=Rootletin=PU(22.1=52.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATAATGCCCAGGACTCA
R:
TGCTCTTCATTCTGCTGACGG
Band lengths:
254-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]