DreEX0002295 @ danRer10
Exon Skipping
Gene
ENSDARG00000059475 | CAMSAP3 (1 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr3:53171225-53185300:+
Coord C1 exon
chr3:53171225-53171308
Coord A exon
chr3:53171532-53171564
Coord C2 exon
chr3:53185162-53185300
Length
33 bp
Sequences
Splice sites
3' ss Seq
CCTTCACTTCTTTCTGACAGTGT
3' ss Score
8.38
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CTGAATCAAAAATTGAAGGAACAAACTGAAGGTACACAAATCGACACATCTCAGTCTGCTGAACCACAGCCTGTTCAACCCTCG
Seq A exon
TGTCCCACCCGCTGGTACTGGAAACTTGTTCCT
Seq C2 exon
ATCCGGTACAGGAAGGACAGGATGCAGTCTAAGCTCAAACCTTGTTTTCCTGTGGTAAACGAAGTGAAGGATCTCTCAAACGGATGTGCCATTGCTGCTGTTATTCACTATTACTGTCCTAGTCTACTGAGATTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059475_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.661 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(18.5=100)
A:
PF0030726=CH=FE(6.4=100)
C2:
PF0030726=CH=FE(31.5=100)
Main Inclusion Isoform:
ENSDART00000082715fB215
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCACAGCCTGTTCAACC
R:
TGGCACATCCGTTTGAGAGAT
Band lengths:
116-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]