RnoEX0016555 @ rn6
Exon Skipping
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2145489-2148032:+
Coord C1 exon
chr12:2145489-2145584
Coord A exon
chr12:2146793-2146825
Coord C2 exon
chr12:2147985-2148032
Length
33 bp
Sequences
Splice sites
3' ss Seq
GGCATGGGTNNNGGCAATAGTGC
3' ss Score
0
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ACTGTTCGGCGGCTGCAGGAGAAGACAGAACAAGAAGCAACCCAGCGTGCATCTCCTGCAGCTCCTCTGGATGGGGCTTCTCCGGCCCAGCCCTCG
Seq A exon
TGCCCCACACGCTGGTACTGGAAGCTGGTTCCT
Seq C2 exon
CACGCAATTGCCTTCTGTTTGAAGGAGTCGGGGAACAAACCCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986-'5-6,'5-5,6-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000001305fB2314
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCAGGAGAAGACAGAAC
R:
GGTTTGTTCCCCGACTCCTTC
Band lengths:
127-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]