RnoEX0016560 @ rn6
Exon Skipping
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2146793-2148435:+
Coord C1 exon
chr12:2146793-2146825
Coord A exon
chr12:2147985-2148032
Coord C2 exon
chr12:2148297-2148435
Length
48 bp
Sequences
Splice sites
3' ss Seq
GCCGCTCCTTCCCCCCCCAGCAC
3' ss Score
9.6
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
TGCCCCACACGCTGGTACTGGAAGCTGGTTCCT
Seq A exon
CACGCAATTGCCTTCTGTTTGAAGGAGTCGGGGAACAAACCCCCTATG
Seq C2 exon
ATTCGATACCGCAAGGACCGTGCCATTGCCCGGAGGGCCCCCTGCTTTCCAAATGTGACTACCCTTCAGGACCTGGCCAGTGGAGCAGCACTGGCTGCCACCATCCACTGCTATTGTCCCCAGCTATTACGACTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986_MULTIEX1-5/5=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF119713=CAMSAP_CH=PU(48.2=85.1)
Main Inclusion Isoform:
ENSRNOT00000001305fB2314
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTACTGGAAGCTGGTTC
R:
ACAATAGCAGTGGATGGTGGC
Band lengths:
140-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]