MmuEX0000952 @ mm9
Exon Skipping
Gene
ENSMUSG00000044433 | 2310057J16Rik
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3598893-3600814:+
Coord C1 exon
chr8:3598893-3598988
Coord A exon
chr8:3600358-3600405
Coord C2 exon
chr8:3600676-3600814
Length
48 bp
Sequences
Splice sites
3' ss Seq
GCCGCTCCTTCCCCCCCCAGCAC
3' ss Score
9.6
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
ACTGTTCGGCGGCTGCAGGAGAAGACAGAACAAGAAGCAGCCCAGCGTGCATCTCCTGCAGCCCCTCTGGATGGGGCCTCTCCTGCCCAGCCCTCG
Seq A exon
CACGCAATTGCCTTCTGTTTGAAGGAGTCGGGGAACAAACCCCCTATG
Seq C2 exon
ATTCGATATCGCAAGGACCGTGCCATTGCCCGAAGGGCTCCCTGCTTTCCAAATGTGACTACCCTTCAGGACCTGGCCAGTGGGGCAGCACTGGCTGCCACCATCCACTGCTATTGTCCCCAGCTATTACGACTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433-'6-6,'6-5,8-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.594 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF119713=CAMSAP_CH=PU(48.2=85.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAACAAGAAGCAGCCCAG
R:
CCAGGTCCTGAAGGGTAGTCA
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types