MmuEX0000951 @ mm9
Exon Skipping
Gene
ENSMUSG00000044433 | 2310057J16Rik
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3598893-3600405:+
Coord C1 exon
chr8:3598893-3598988
Coord A exon
chr8:3599217-3599249
Coord C2 exon
chr8:3600358-3600405
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCCTCTGGCAATAGTGC
3' ss Score
5.45
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ACTGTTCGGCGGCTGCAGGAGAAGACAGAACAAGAAGCAGCCCAGCGTGCATCTCCTGCAGCCCCTCTGGATGGGGCCTCTCCTGCCCAGCCCTCG
Seq A exon
TGCCCCACACGCTGGTACTGGAAGCTGGTTCCT
Seq C2 exon
CACGCAATTGCCTTCTGTTTGAAGGAGTCGGGGAACAAACCCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433-'6-5,'6-4,7-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.594 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCAGGAGAAGACAGAAC
R:
GGTTTGTTCCCCGACTCCTTC
Band lengths:
127-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types