MmuINT0002336 @ mm9
Intron Retention
Gene
ENSMUSG00000044433 | 2310057J16Rik
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3598893-3600814:+
Coord C1 exon
chr8:3598893-3598988
Coord A exon
chr8:3598989-3600675
Coord C2 exon
chr8:3600676-3600814
Length
1687 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CACTCTCTTCCTGTCCACAGATT
3' ss Score
11.83
Exon sequences
Seq C1 exon
ACTGTTCGGCGGCTGCAGGAGAAGACAGAACAAGAAGCAGCCCAGCGTGCATCTCCTGCAGCCCCTCTGGATGGGGCCTCTCCTGCCCAGCCCTCG
Seq A exon
GTGAGGCTAGGACAAGGGATGGATGGATGGATGGATGGATGGATGGACAGGTGGATGGATGGACAGGTGGATGGATGGTTATGAGGCAGGTGGGAAGGGATGGGCTGCACCTCCTGGCCATTGCTGAGATTGAGGGTGGGCCTGGAGGTGACTCTCTTTTCCTCTTTTTCTCTGCACTTTTTATTGCACCGGCCCCTGCTGTCCCCTTCTCTGTCCCTCTGGCAATAGTGCCCCACACGCTGGTACTGGAAGCTGGTTCCTGTAAGTGAGGCTGTCTGTTTTGTCTTGTCTGCCTGTCCTGCTTGTTTCTGTCTTGTCTGTGTCATTTCTGCTTGATTGCCTGCACACCCCAACCCCCAGCTGTGAGCAATGGAGGTAGCACTCCAGCCCTGGGGACTGAGAGAACTCTTTGGAACTTGAGATGGGGGGAGGGGAGGACCTCTGTCATTAGCAGGGGTAGAGCTGGGCATGTTTGTGCATGTCTGTAATCCTGCTGAGGCAGGAGGATTGCAAATTTCAGGCCAGCCTAGGGCATATCTAGAGTCCCTGTCTTAAAAGAACCACAAACAGACTGAGAGATAAGAGGATTGAAGCTGAAGAGATGCCTGTACCTCCAGCTCCAGGGGATCCAGCACCCTCTTCTGTCCTCCATCGGCACTATATGCACATGCACGTACCCCATATACAGACATGTACATACACACATACAATAAAAATAAATCTTAAAACATTCAAAAACAAAAAAGCCCAAACCAGAAAGTAGATGAGCTTTTCATTAACTAAGAAGGGAGGACCTGAGCCTGTACTTAGCTTGAGAAGAGGGAGCCCCCTTGCCTACCCCGTACGTAGGCAGTGACCTCAAATTGCAGAGACATAGAAGGAATCTTCCTAGCCAAGAGGAAGATCCCCAGCTTCCCTAGTTGGGTAGAATTTTGAGGTCTAGAAGATTTTAAATTGTCTTTCTTCCCCTAATTAGCTGTATGATATTACACCATGGTCTAAACCTCTCCTTGCTTCACATAACTTACTCCTGAAGTGTATAAATACAGGGACCATGTGGATTGGATAGGGGTCCCCACCTTTGCTCACTGCTCCTCCCTACCTGGGGTCTGGGTTGGGGGGTGGATTATTTTACCTACCTGCTTCTTTTGCATCCTCTCCCTAAGCCAGGGCCTGGGGCTTGTCAAGGGAGGCTGCTTTTGTGGGGTTCCTCAGGGCTGGGAGGAGCTGGGGTCCCCGAAGCCGGCCAGAGTATGATTAGGGAGCTAGATGGCCAAGGCTCAGGACAGGGGTCAGTACTCCTCCTTTTTCCAGAGGGGGCTTTGGGGGCCCAGCAGGCCTTGCTGACGGCCGCTCCTTCCCCCCCCAGCACGCAATTGCCTTCTGTTTGAAGGAGTCGGGGAACAAACCCCCTATGGTAATGTATCCCCCTTCCCCGGGGTCTCAGGAGGCCTTGTCCCTAACCCCTGCTGCTGGCCTGGCTGCTCACAGACAAGTCTTCTGCCTCTTGCTTCTGTCCCTCCCTTGCTCCAGGCTGGCCTCCCCTTCCCTCCCATTCTGGCTCTGGGGATCTGAGCTTCCCACCCCTTCATGGCAGAAATCCCAGTTTTCCCTATTCCAGCCTGCATGACTGCCAACCCGGATATGGCCAGCCTGACTGCTAACCTCACTCTCTTCCTGTCCACAG
Seq C2 exon
ATTCGATATCGCAAGGACCGTGCCATTGCCCGAAGGGCTCCCTGCTTTCCAAATGTGACTACCCTTCAGGACCTGGCCAGTGGGGCAGCACTGGCTGCCACCATCCACTGCTATTGTCCCCAGCTATTACGACTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433-2310057J16Rik:NM_027171:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF119713=CAMSAP_CH=PU(48.2=85.1)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCAGGAGAAGACAGAAC
R:
CCTCAAGTCGTAATAGCTGGGG
Band lengths:
225-1912
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: