BtaINT0031117 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011356 | CAMSAP3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr7:17679743-17681404:+
Coord C1 exon
chr7:17679743-17679838
Coord A exon
chr7:17679839-17681265
Coord C2 exon
chr7:17681266-17681404
Length
1427 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
GACACGACTCCCACCCGCAGATT
3' ss Score
8.4
Exon sequences
Seq C1 exon
ACCATCCGGCGGCTGCAGGAGAAGACGGAGCAGGAAGCTGCCCAGAGAGCTACTCCAGCGGCCCCTGCAGATGGGGTGGCCCCAGCGCAGCCTTCG
Seq A exon
GTGAGGCTGGGGTGATGGATGGAAGGAAGGAGGGAGGGGCGGATCTTTGAGGGCTGGATGGGTAGGTCGGGGCTGTGCCTCGAGGCCATTCCTGCTCTTGGCGGGGCGGAAGTGACTCTCTCTCTCTCTCTCTCTCTCTGCCGCCTTGCCTCTGCCCACTCCTGCCACACTCTCCTCTCTGCCTCTCTGGCATCAGTGCCCCACACGCTGGTACTGGAAGCTGGTTCCTGTAAGTGGGGCTGTCTTTCTGCCCTGTCTGCCTGCCCCGCTTGTCGCTGTCTGTGTGTCTCTTTCTGCCTGCCTGTCCCGCTCCCTCTCCTATTCTCCCCTGCTCCCAGTTATGAGCAAAGGAAGTGGGACCCAGCCCTGGGGGACAGAGGGAAGCCCTTTGGGGAACCAAGGCAAGAGGGTCATCTCTGCTCTTACTTCTCCCCTGGTATATGACTCCCCTCCCAGTAATCCAGAGGCTTGTCCACCTGAGCCGAGGTGGGGAGACCTCTGGGGCTTCTGAGGGGAGGACCCCAGCCCATCAGACACATGGATCCTGACCCCAGCAGGCAGGGCACAGGGAGAAGACCCTTCTGGCCAAGAGGAAGATCCTCAAACCCAAAAGAGGGGAGAGGAACCTTCCTAACTGAGCCTCCAGCTTCCCTAAGGACAGCTCCCTGCTCCCAGCTCTGGAGGCAGTGGGGTGTCCATCCCTGAAGTGCAATAAGGGGAAAGTGACCACTGCAAGTGGGGTGAGGGTGGGGGCGCTTTGGGCTGAAGCCCCTGCCTTTGCTCACTTCAGGGCCTCCTCCTTCCCCCCACCCTAGGGCCTGGGTCAGGGGCTCCTCTCCTGCCTACCTGCTTCCTCTGCTTGCCCTCCCCCAGCCAGGGCCTGGGTCTCTTGAGTGGGTGGGGGAGGACTTGCTGCATGAGAGGCTGCTCTGTTGGGTCCCTCCGTGCTGGGAGGTGCTGGGGTCCCCAGAGCCGGCCAGAGCACAGCCAGGGAGCTGGACGGCCAGGGCTCAGGACAGGGGTCAGGGCCGTCCCCCATCCCGGAGGTGTGCTTGGGGGCCCAGCAAGTCAGCACCCCTCCCGCCCCGCTGACGGCTGCTCCTCTCCCCCCCAGCACGCAATTGCCTTCTGTTTGAAGGAGTCGGGGAGCAAACCCCCCATGGTAATGTATCCCCCACCCCAGGGTCTCAGGAGTCCCTGCCCCCAGCCCCCGCTGCTGGCCTGGCTGCTCGCGGACACCTCCTCTGCCTCTTGCTGCTGCCCTTCCCCACCCTGCTCCAGGCTGGCCCCCCTCCCACACTGGCTCTGGGACCCCCCTGGCTTCACGCCCCTTCGTGGTGGAAACCCCAGGCCTCCCCACACAGCTTGCATGACCACGGACTTGGAGGCCAGCCTGACCTCTGACCTGACACGACTCCCACCCGCAG
Seq C2 exon
ATTCGATATCGCAAGGACCGTGCGGTGGCCCGACGTGCCCCCTGCTTTCCGACGGTGACCAGCCTCCAGGACCTGGCAAGTGGGGCTGCGCTGGCCGCCACAATCCACTGCTACTGTCCCCAGCTCTTGCGACTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011356:ENSBTAT00000015094:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.573 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF119713=CAMSAP_CH=PU(48.2=85.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGAGAAGACGGAGCAG
R:
TCGCAAGAGCTGGGGACA
Band lengths:
216-1643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]