RnoINT0028804 @ rn6
Intron Retention
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2147985-2148435:+
Coord C1 exon
chr12:2147985-2148032
Coord A exon
chr12:2148033-2148296
Coord C2 exon
chr12:2148297-2148435
Length
264 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
CACTCCATTCCTGCCCACAGATT
3' ss Score
9.28
Exon sequences
Seq C1 exon
CACGCAATTGCCTTCTGTTTGAAGGAGTCGGGGAACAAACCCCCTATG
Seq A exon
GTAATGTATCCCCCTTCCCCAGGGTCTCAGGAGGCCCTGTCCCCAGCCCCCGCTGCTGGCCTGGCTGCTCGCAGACAAGTCTCTTGCTTCTGTCCCTCCCTTGCTCCAGGCTGGCCCTCCCTTCCCTCCCATTCTGGCTCTGGGGATCCTGAGCTTCCCACCCCTTCATGGCAGAAATCCCACGTTTCCCTATTCCATCCTGCATGCCTGCCAACCCGGACATGGCTGGCCTAACTACTAACCTCACTCCATTCCTGCCCACAG
Seq C2 exon
ATTCGATACCGCAAGGACCGTGCCATTGCCCGGAGGGCCCCCTGCTTTCCAAATGTGACTACCCTTCAGGACCTGGCCAGTGGAGCAGCACTGGCTGCCACCATCCACTGCTATTGTCCCCAGCTATTACGACTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986:ENSRNOT00000001305:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF119713=CAMSAP_CH=PU(48.2=85.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCAATTGCCTTCTGTTTGA
R:
CCTCAAGTCGTAATAGCTGGGG
Band lengths:
187-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]