HsaINT0086976 @ hg38
Intron Retention
Gene
ENSG00000076826 | CAMSAP3
Description
calmodulin regulated spectrin associated protein family member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr19:7606476-7608264:+
Coord C1 exon
chr19:7606476-7606571
Coord A exon
chr19:7606572-7608125
Coord C2 exon
chr19:7608126-7608264
Length
1554 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
GACCTGGCTCCCATCTGCAGATC
3' ss Score
10.14
Exon sequences
Seq C1 exon
ACCGTCCGGCGGCTGCAGGAGAAGACCGAGCAGGAAGCGGCCCAGCGAGCCTCTCCAGCAGCCCCTGCAGACGGGGCGGCCCCGGCGCAGCCCTCG
Seq A exon
GTGAGGCCAGGGCATAGAACCGTCAGAAGGATGGGGGACCGGAGATCTGGGAGGGCAGGGCTGTGCTTCCTGGACACTCCTGAAGTGGGGAGGGGGCTAGAGGTGACACACTCTCTCTTTCTTCCCCCCTCTCTCAATCTCTCTGTGCCCTGCCCGTCCCCTGTGCCGGTACCCGCTGCCCTCCTCTCTGCCTCTCTGGCCTCAGTGCCCTACGCGCTGGTACTGGAAGCTGGTTCCTGTAAGTGGGGCTGTCTGTCCGCCCCGTCTGCCTGCCCTGCTTGTAGCTCTGTCTGTCTGTATGTCTGTTTCTGCCTGCCTGTCTGCGCGCCCTCTCATACCTCCCCAAGCTGTGAGCAAAGGAGGTTGGACCCCAGTCCTGGGAGACAGGGAGAACCCCTCTGTGAACCAAGAGAAGGGTAGAATCTCGGCCATTAACTGAGAGGGCAGACCCCTCCCCCAGCGAACTGATGGGTGGGGACGAACTTCCCCTCCCGTTATTCAGAAGGGCAAGCCCTCCCCGTTCCCATTAATGAAGAGGGTGGGACCCCCTGAACCTGTCCCCCTTAGCCGAGGTGGGGAGACCACATAAATTTCTGAAGGGGGGACCTGCAGCCCATCACAAACGTGGATCCTGACCCTAGCAGGCAGGGCACCCTCTGGCCAAGGGGAAGACCCTCCAATGCAGAAGAAGATAGAATAACTTTCCTAACTGAGACCCCCAGCTTCCCTAGAGAAAAATCCCAGCTTTGAAAAGGAGGAGGAGGCCCATCCCTGAAGCTGGAAGTTGAAATTTCTCTCTTCCCTGAATGAGCTGTGTGACCTTGCAGAAGTATCTAAACCTCTCTGTGCTTCATATAAATTACTCCCATAGTAGATAAACAAGGAGGAAGTGGGGGAGGTTTTGGGCTGGCTGGCGTCCCCACCTTTGCTCACTCCTTCCCCCACCCTGGGGCCTGGGTTGGGAGGTTCCCTTCCTGCCTACCCGCTTCCTCTGCATCCTCTCCCCAAGCTGGGGGCCTGGGTCTTTTGTGGGAGGAGGATTCCCCGCATAAGAGGGGGTTCCTACTCTGTGGGGTCCCTTGGGGCTGGGAGGAGCTGGGGTTCGCGAAGCCGGCCAGAGCAGTCAGGGAGCTGGACGGCCGGGGCTCAGGACCAGGGTCAGGGCTACCCCCTCCCCCCCAAGGTGGGCTTGGGGGCCCAGCAGGTCAGCACCCCTCCCCCTTGCTGATGGCTGCTCCTCTCCCCCCAGCACGCAATTGCCTTCTGTTTGAAGGAGTCGGGGAGCAAACCCCCCATGGTAATGTATCCCCCGCCCCGGGGTCCCAGGAGTCCCTGTCCCCAGCCCCCGCTGCTGGCCTGGCTGCTCGAAGACATCTCCTCTGCCTCTTGCTGCTGCCCCTCCCCTGCTCCAGGCTGGCCCCCCAACTCTGTCTCTGGGACCCCCAGCTTCCCGCCCCCTCATGGCGGAAACCCCAGGCCTCCCTGCCCAGCCTGCATGACCGCTGACCCTGGGGGCCAGCCTGGCCACTCACCTGACCTGGCTCCCATCTGCAG
Seq C2 exon
ATCCGATACCGCAAGGACCGTGTGGTGGCGCGACGTGCCCCCTGCTTCCCGACGGTGACCAGCCTCCAGGACCTGGCCAGTGGGGCCGCGCTGGCCGCCACCATCCACTGCTATTGTCCCCAGCTGCTTCGACTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826:ENST00000160298:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF119713=CAMSAP_CH=PU(48.2=85.1)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGAGAAGACCGAGCAG
R:
CCTCAAGTCGAAGCAGCTGG
Band lengths:
222-1776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development