BtaEX0006959 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011356 | CAMSAP3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr7:17679743-17681404:+
Coord C1 exon
chr7:17679743-17679838
Coord A exon
chr7:17680953-17681000
Coord C2 exon
chr7:17681266-17681404
Length
48 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCCTCTCCCCCCCAGCAC
3' ss Score
8.29
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
ACCATCCGGCGGCTGCAGGAGAAGACGGAGCAGGAAGCTGCCCAGAGAGCTACTCCAGCGGCCCCTGCAGATGGGGTGGCCCCAGCGCAGCCTTCG
Seq A exon
CACGCAATTGCCTTCTGTTTGAAGGAGTCGGGGAGCAAACCCCCCATG
Seq C2 exon
ATTCGATATCGCAAGGACCGTGCGGTGGCCCGACGTGCCCCCTGCTTTCCGACGGTGACCAGCCTCCAGGACCTGGCAAGTGGGGCTGCGCTGGCCGCCACAATCCACTGCTACTGTCCCCAGCTCTTGCGACTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011356_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.573 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF119713=CAMSAP_CH=PU(48.2=85.1)
Main Inclusion Isoform:
ENSBTAT00000015094fB1333
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAGACGGAGCAGGAAG
R:
GTCACCGTCGGAAAGCAGG
Band lengths:
139-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development