DreEX0002298 @ danRer10
Exon Skipping
Gene
ENSDARG00000091359 | CAMSAP3 (2 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr1:58401285-58402839:-
Coord C1 exon
chr1:58402807-58402839
Coord A exon
chr1:58402027-58402074
Coord C2 exon
chr1:58401285-58401423
Length
48 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCCGCACCGCACCAGCAT
3' ss Score
1.46
5' ss Seq
GTGGTAACG
5' ss Score
4.76
Exon sequences
Seq C1 exon
TGTCCTCAGCGCTGGTACTGGAAGCTGGTCCCT
Seq A exon
CATGCCATCGCATTTTGTTTGAAGGAGTCTGGGAATAAACCTCCAGTG
Seq C2 exon
ATCCGTTACAGGAAAGACAAGGTTCAGTCTAAGCAGAGTCCGGTGTTCTCTGTGGTGTCTGGAGTGAAGGATCTCTCCAGCGGCTGCGCCATCGCTGCTGCGCTTCACTTCTACTGCCCTCAGATACTGCCGCTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091359_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACTGGAAGCTGGTCCCT
R:
GAGGGCAGTAGAAGTGAAGCG
Band lengths:
141-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]