DreEX0002306 @ danRer10
Exon Skipping
Gene
ENSDARG00000045199 | CAPN1 (1 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr7:6570208-6575704:-
Coord C1 exon
chr7:6575536-6575704
Coord A exon
chr7:6573015-6573098
Coord C2 exon
chr7:6570208-6570293
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTACAAGATC
3' ss Score
7.44
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCTGAACGGCTGTTACGAGGCTCTGTCTGGAGGCAGCACGTGTGAAGGCTTCGAGGATTTCACCGGTGGAGTGACAGAGATGTACGAGTTAAAGAAAGCTCCCGCTGACCTCTTCAGCATTATTGGCCGCGCCATCGAGAGAGGCTCGCTGCTGGGCTGCTCTATTGAT
Seq A exon
ATCACCAGTAAGTTTGACATGGAGGCGGTGACCTTTAAGAAGCTGGTCAAAGGCCACGCATACTCTGTGACCGGAGCAGAAGAG
Seq C2 exon
GTGGTCTACAGGGGGAACATGACCAAACTGGTGCGCATCAGGAACCCGTGGGGGGAAGTGGAGTGGACTGGAGCCTGGAGCGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045199-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.7=100)
A:
PF0064816=Peptidase_C2=FE(9.0=100)
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACGAGGCTCTGTCTGGAGG
R:
TCATGTTCCCCCTGTAGACCA
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]