HsaEX6002900 @ hg38
Exon Skipping
Gene
ENSG00000014216 | CAPN1
Description
calpain 1 [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr11:65186170-65188040:+
Coord C1 exon
chr11:65186170-65186338
Coord A exon
chr11:65187215-65187298
Coord C2 exon
chr11:65187955-65188040
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGCCTCTTTCTGCAGATC
3' ss Score
12.09
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGTAAATGGCAGCTACGAGGCCCTGTCAGGGGGCAGCACCTCAGAGGGCTTTGAGGACTTCACAGGCGGGGTTACCGAGTGGTACGAGTTGCGCAAGGCTCCCAGTGACCTCTACCAGATCATCCTCAAGGCGCTGGAGCGGGGCTCCCTGCTGGGCTGCTCCATAGAC
Seq A exon
ATCTCCAGCGTTCTAGACATGGAGGCCATCACTTTCAAGAAGTTGGTGAAGGGCCATGCCTACTCTGTGACCGGGGCCAAGCAG
Seq C2 exon
GTGAACTACCGAGGCCAGGTGGTGAGCCTGATCCGGATGCGGAACCCCTGGGGCGAGGTGGAGTGGACGGGAGCCTGGAGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000014216-'34-34,'34-29,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.7=100)
A:
PF0064816=Peptidase_C2=FE(14.4=100)
C2:
PF0064816=Peptidase_C2=PD(7.5=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGAGGGCTTTGAGGACT
R:
CATCCGGATCAGGCTCACCA
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains