DreEX0002702 @ danRer10
Exon Skipping
Gene
ENSDARG00000078541 | CERS3 (2 of 2)
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:HGNC:23752]
Coordinates
chr7:9677443-9682192:+
Coord C1 exon
chr7:9677443-9677621
Coord A exon
chr7:9680468-9680585
Coord C2 exon
chr7:9682074-9682192
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACGAATGTGTGTCTGTTTAGGTT
3' ss Score
9.21
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGTTGGTGATCGGGACGCTGGGTGAGTGGTTTTGGTGGGATCGTCTCTGGCTGCCGGGGAACCTGACGTGGGCTGATCTGAAAGATGAAGACGGTCTCGTCTATGCCAGACCTTCACACCTTTACATCACACTGCCATACGCTCTCATCTTCCTGATGGTCAGATACTTGTTTGAGCG
Seq A exon
GTTAATAGCGACACCTCTCGCAGCTTCACTGGGCATTACAGAGAAAATCAGACACAGAGCGGAGCACAACACTGTTCTTGAACAACACTTCACAACCAAGTCAAAAAACCCAGGACAG
Seq C2 exon
GCAGATATTGATGGCCTGTGTAAAAAATGCGGCTGGTCGAGTAGACAAGTGGAGCGCTGGTTCAGGAGGAGACGAAACCAGGACCGGCCCGGGGTTCTCAAAAAATTCAGAGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078541_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(45.6=65.0)
C2:
PF0004624=Homeobox=PD(50.9=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTGAGTGGTTTTGGTGG
R:
CCTGGTTTCGTCTCCTCCTGA
Band lengths:
243-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]