DreEX0002806 @ danRer10
Exon Skipping
Gene
ENSDARG00000104358 | CLASP1 (2 of 2)
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr11:43727815-43731558:-
Coord C1 exon
chr11:43731455-43731558
Coord A exon
chr11:43728873-43728896
Coord C2 exon
chr11:43727815-43728062
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTGGCTTTTCTCTGCTTCAGCTT
3' ss Score
8.32
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATCGGTTCGGGCTCCTCCATCAGGCTCGTATCTCTGCGTCGGTGAACGCCATGCGGATCCTGAACACCGGCACAGAGGTGGAGGCGGCGGTTGCAGACGCTCTG
Seq A exon
CTTCTGGGAGACTCGAGGAATAAG
Seq C2 exon
CGTGGTCAGGTGCGGCGGCGGTATGAGTCTCCAGGTGTGTGTTCAGATGATGATGTGAACAGTGATGCGTCGAGTGTGTGCTCTGAGCGATCCTTCAGTTCTCGTAACGGGAGTGCGGTCCCACATCACCTGCGGCAGACAGAGGACGTGGCGGAAATCCTGAACCGCTGCGCCAGCGCTAACTGCACTGAGAGGAAAGAGGGACTGATGAGCCTTCAGAACCTGCTGAAGAACCAGAGAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104358_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCTCTGCGTCGGTGAACG
R:
ACACCTGGAGACTCATACCGC
Band lengths:
115-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]