BtaEX0009124 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73552545-73556040:-
Coord C1 exon
chr2:73555937-73556040
Coord A exon
chr2:73554029-73554052
Coord C2 exon
chr2:73552545-73552789
Length
24 bp
Sequences
Splice sites
3' ss Seq
CAATATTTTCCTGCCTACAGCTG
3' ss Score
8.25
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
ACCGCTTTGGGCTCGGCCAGGCAGGAAGAATTCCTGGTTCTGTGAATGCCATGCGGGTTCTGAGCACCAGTACAGATCTGGAAGCTGCTGTTGCTGATGCTTTG
Seq A exon
CTGTTAGGAGACTCCAGGAGCAAG
Seq C2 exon
AAGAAGCCTGTGAGGAGAAGATACGAGCCCTATGGGATGTATTCTGATGATGACGCCAACAGCGACGCCTCCAGCGTGTGCTCGGAGCGCTCGTATGGCTCCCGGAATGGGGGTATCCCCCACTACCTGCGCCAGACAGAGGACGTGGCTGAGGTGCTCAACCACTGTGCCAGCTCCAACTGGGCTGAGAGGAAGGAAGGGCTGCTGGGTCTGCAGAACCTGCTAAAGAGCCAGAGAACGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.707
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF123483=CLASP_N=PU(16.2=46.3),PF116403=TAN=PU(51.4=45.1)
Main Inclusion Isoform:
ENSBTAT00000031027fB1742
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTCTGAGCACCAGTACAG
R:
GCTGTTGGCGTCATCATCAGA
Band lengths:
113-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development