DreEX0021915 @ danRer10
Exon Skipping
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38451749-38456524:+
Coord C1 exon
chr9:38451749-38451852
Coord A exon
chr9:38454719-38454742
Coord C2 exon
chr9:38456295-38456524
Length
24 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTGGTTGTCTTCAGCTG
3' ss Score
9
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
ATCGCTTTGGTCTGATCCATCAGGCTCGCATTTCTGCATCTGTCAATGCTATGAGGGTGCTGAACACTGGCACAGAAGTGGAGGCGGCCGTGGCTGATGCTTTG
Seq A exon
CTGTTAGGAGACTCCAGGAATAAG
Seq C2 exon
CGCAAGCCATTGAGAAGGAGGTATGAGTCTGACGACGATGCTAACAGCGATGCGTCCAGTGCCTGCTCAGAGCGGTCCTATAGTTCCCGTAATGGAGGTATTCCTCATTACCTGCGTCAGACAGAGGACGTGGCCGAGGTGCTCAACCACTGCGCTAGCTCCAACTGGTCTGAGAGGAAAGAGGGCCTGCTGGGCCTGCAGAACCTGCTGAAGAGTCAGCGTATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.664
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF123483=CLASP_N=PU(16.3=49.4),PF116403=TAN=PU(61.7=48.1)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCAGGCTCGCATTTCTG
R:
ACCTCCTTCTCAATGGCTTGC
Band lengths:
111-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]