HsaEX0015474 @ hg19
Exon Skipping
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:17088]
Coordinates
chr2:122165047-122168545:-
Coord C1 exon
chr2:122168442-122168545
Coord A exon
chr2:122166600-122166623
Coord C2 exon
chr2:122165047-122165291
Length
24 bp
Sequences
Splice sites
3' ss Seq
CAATATTTTCCTGCCTACAGCTG
3' ss Score
8.25
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
ATCGGTTTGGGCTTGGCCAGCCAGGAAGAATACCTGGTTCTGTGAATGCCATGAGAGTTCTGAGCACAAGTACAGATCTTGAAGCTGCTGTTGCTGATGCTTTG
Seq A exon
CTGTTAGGAGACTCCAGGAGCAAG
Seq C2 exon
AAGAAGCCTGTGAGGAGGAGATATGAGCCGTATGGGATGTATTCTGACGATGATGCCAACAGTGATGCCTCAAGTGTTTGCTCTGAGCGCTCATATGGCTCCAGGAATGGTGGCATTCCCCATTATCTGCGGCAGACTGAGGATGTAGCAGAAGTTCTCAACCACTGTGCTAGTTCAAACTGGTCAGAAAGGAAAGAAGGGCTTCTGGGCCTGCAGAACTTACTGAAGAGCCAAAGAACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.814
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF123483=CLASP_N=PU(16.2=46.3),PF116403=TAN=PU(50.7=45.1)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGAAGCTGCTGTTGCTGA
R:
CTTGAGGCATCACTGTTGGCA
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)