HsaINT0035719 @ hg19
Intron Retention
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:17088]
Coordinates
chr2:122166600-122168545:-
Coord C1 exon
chr2:122168442-122168545
Coord A exon
chr2:122166624-122168441
Coord C2 exon
chr2:122166600-122166623
Length
1818 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CAATATTTTCCTGCCTACAGCTG
3' ss Score
8.25
Exon sequences
Seq C1 exon
ATCGGTTTGGGCTTGGCCAGCCAGGAAGAATACCTGGTTCTGTGAATGCCATGAGAGTTCTGAGCACAAGTACAGATCTTGAAGCTGCTGTTGCTGATGCTTTG
Seq A exon
GTAAGAGGCACAGTATGTATGTACACAGTCTTTTTGAAATACTCATCTGCATTTCTCTCTGTCCTAACAGGAAATTGCCCCCAAATCAGGTTATGAATTCATCTTTGAAACTCTTTAAAATTGTGTTAATGTTGGGTAAATTTATATTGTTATTGTTTGCCCCTTAAACTTTTACCTCTGCACACATATAAGTGAAAATGGACTTTACAGAAAATATTAGCATCAAGTATTTCTTATCTGTGCTCTTCAGTATCAAGGAGCTTTTGATGACCCTGGACTTCTCAGATGTCATTGGGCTTCTTTTTTTCTTTTTAACCATGTTTTTTTTTCTGGCATTTCCTTTTTTCCATTCTGTTGCTTCTGTTGCTTTACAGACTTTGATGGCATAACCTAGACATATTATTATAATAATAGGTAATAGAGTTTGAGGTTTGAAAATCTTGCATTTATTCTATTATCTTGTCTGTTTGATTTTATGTTGTTTTTCCTAAATCTTTGAGGATGTGAAGCAGTGGTGGAATATGTTTTTGCATCATTATAGTGTAATATCTGAAAAACATAAATGATCATGGATCCTTTAATTTTTTTGGTTATACCAAAAAGTTTCCTAGTAGAATCAGCTTGTGGTCAGATTGCTTTTTAAAGATGCATTTCAGCTAGTCACACAGTCTCTTGCATATTCTGGTTTATGTGCTCAGCATTTGAAATGGATATTCTTTAGAACTGTCTGATCACTGGCCTTGCTCTTGCTGTTTTAAGATTTATTCTCTTGTAAGGGAAAAAAGTATGTAATATCCTGCTTTCAGACTCTGAAGTTTTTAATCCAGCCATGTTTTGTCAGATCAACATTTTATAGTTTATGGCTATGGTGATTCCAGTTTTCATTCCTTCTTGTCTTGCCCTCATTTATTCCTGCTCAGTCAGGTTCTTTGACAAGTGTCTGTGAGCAGTTTGCTGCTCTCCTAATCCTTTTCCTGTAGGCAAGCTGCCTGGCCACCTGTATTCCTCAACCTTATGTATAGAAAGACTTTTTTCTGGCAGGTGCTAGAGTTCAGGGTAACTGCTCTAACCATGGCTTTAGGAGTCAAGAGCTGGAACAGAATTATCTGAAGCTGTTTGTCCTTCCAAGTTGCAGCATTTAGAATCTGTATCTTATTTGTTCAGAGACCCTGGGAAGTGGAGGTCAAAGGGGTGGGAAATGATGGATGTGAAACCCTTAGTTGAGACTTCCACTTAAGGCAGGGAAATTTCTTAGTTCTTTAAAGAACTGCATAAGGGACTGTGTGTAAAGTTCTAGGAGGCGGAATAGGACTTGAGAGTTTGAGCTTTGGCTTAACTTGACTGGAGCTTTTCTCTGAGCTCTAGCTCCCATTAGATTCATGCTGCCCTTGTTACTTTTTGTCCAAACTGTTGAGTCTCTCCAAGTGACCTGCTTCTGAAGAGAAAACACAGAAATGGTACAGAATCTTTGCCTCGCTGAATAGACACCACGGCGCCAGACAGAATGTCTCAGAGGAATAGATAGTAGAATTAATGGTGACCTTAGAGATTTGCCTCACCGATATGGGAAAAGTTTTAGCAAAGAATTACAGCAAGTTACCAGAAGGTCTTCTGAGACGTGGAGGAGGGTTAGGAAATGCCATTTTGAAAGCATTCTTTATTATTATTAGCTTGATATGAAACGCTTGCTAACCTGTATTTTTGGTTTGCTAAGATATGTTTTGCTGTACACTTTTGTTGCAAGAACAATCCCTACATATGCTTCTGACATAATTCTCTATGCTTTTTCCCCATCCTTCAATATTTTCCTGCCTACAG
Seq C2 exon
CTGTTAGGAGACTCCAGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054-CLASP1:NM_001142273:24
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)