HsaINT0035719 @ hg38
Intron Retention
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:121409024-121410969:-
Coord C1 exon
chr2:121410866-121410969
Coord A exon
chr2:121409048-121410865
Coord C2 exon
chr2:121409024-121409047
Length
1818 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CAATATTTTCCTGCCTACAGCTG
3' ss Score
8.25
Exon sequences
Seq C1 exon
ATCGGTTTGGGCTTGGCCAGCCAGGAAGAATACCTGGTTCTGTGAATGCCATGAGAGTTCTGAGCACAAGTACAGATCTTGAAGCTGCTGTTGCTGATGCTTTG
Seq A exon
GTAAGAGGCACAGTATGTATGTACACAGTCTTTTTGAAATACTCATCTGCATTTCTCTCTGTCCTAACAGGAAATTGCCCCCAAATCAGGTTATGAATTCATCTTTGAAACTCTTTAAAATTGTGTTAATGTTGGGTAAATTTATATTGTTATTGTTTGCCCCTTAAACTTTTACCTCTGCACACATATAAGTGAAAATGGACTTTACAGAAAATATTAGCATCAAGTATTTCTTATCTGTGCTCTTCAGTATCAAGGAGCTTTTGATGACCCTGGACTTCTCAGATGTCATTGGGCTTCTTTTTTTCTTTTTAACCATGTTTTTTTTTCTGGCATTTCCTTTTTTCCATTCTGTTGCTTCTGTTGCTTTACAGACTTTGATGGCATAACCTAGACATATTATTATAATAATAGGTAATAGAGTTTGAGGTTTGAAAATCTTGCATTTATTCTATTATCTTGTCTGTTTGATTTTATGTTGTTTTTCCTAAATCTTTGAGGATGTGAAGCAGTGGTGGAATATGTTTTTGCATCATTATAGTGTAATATCTGAAAAACATAAATGATCATGGATCCTTTAATTTTTTTGGTTATACCAAAAAGTTTCCTAGTAGAATCAGCTTGTGGTCAGATTGCTTTTTAAAGATGCATTTCAGCTAGTCACACAGTCTCTTGCATATTCTGGTTTATGTGCTCAGCATTTGAAATGGATATTCTTTAGAACTGTCTGATCACTGGCCTTGCTCTTGCTGTTTTAAGATTTATTCTCTTGTAAGGGAAAAAAGTATGTAATATCCTGCTTTCAGACTCTGAAGTTTTTAATCCAGCCATGTTTTGTCAGATCAACATTTTATAGTTTATGGCTATGGTGATTCCAGTTTTCATTCCTTCTTGTCTTGCCCTCATTTATTCCTGCTCAGTCAGGTTCTTTGACAAGTGTCTGTGAGCAGTTTGCTGCTCTCCTAATCCTTTTCCTGTAGGCAAGCTGCCTGGCCACCTGTATTCCTCAACCTTATGTATAGAAAGACTTTTTTCTGGCAGGTGCTAGAGTTCAGGGTAACTGCTCTAACCATGGCTTTAGGAGTCAAGAGCTGGAACAGAATTATCTGAAGCTGTTTGTCCTTCCAAGTTGCAGCATTTAGAATCTGTATCTTATTTGTTCAGAGACCCTGGGAAGTGGAGGTCAAAGGGGTGGGAAATGATGGATGTGAAACCCTTAGTTGAGACTTCCACTTAAGGCAGGGAAATTTCTTAGTTCTTTAAAGAACTGCATAAGGGACTGTGTGTAAAGTTCTAGGAGGCGGAATAGGACTTGAGAGTTTGAGCTTTGGCTTAACTTGACTGGAGCTTTTCTCTGAGCTCTAGCTCCCATTAGATTCATGCTGCCCTTGTTACTTTTTGTCCAAACTGTTGAGTCTCTCCAAGTGACCTGCTTCTGAAGAGAAAACACAGAAATGGTACAGAATCTTTGCCTCGCTGAATAGACACCACGGCGCCAGACAGAATGTCTCAGAGGAATAGATAGTAGAATTAATGGTGACCTTAGAGATTTGCCTCACCGATATGGGAAAAGTTTTAGCAAAGAATTACAGCAAGTTACCAGAAGGTCTTCTGAGACGTGGAGGAGGGTTAGGAAATGCCATTTTGAAAGCATTCTTTATTATTATTAGCTTGATATGAAACGCTTGCTAACCTGTATTTTTGGTTTGCTAAGATATGTTTTGCTGTACACTTTTGTTGCAAGAACAATCCCTACATATGCTTCTGACATAATTCTCTATGCTTTTTCCCCATCCTTCAATATTTTCCTGCCTACAG
Seq C2 exon
CTGTTAGGAGACTCCAGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054:ENST00000409078:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development