MmuINT0036715 @ mm9
Intron Retention
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:120435843-120439923:+
Coord C1 exon
chr1:120435843-120435946
Coord A exon
chr1:120435947-120439678
Coord C2 exon
chr1:120439679-120439923
Length
3732 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CTCCTCGTGGGACATTTTAGAAG
3' ss Score
1.78
Exon sequences
Seq C1 exon
ATCGGTTTGGGCTGGGCCAGTCAGGACGAATCCCTGGTTCTGTGAACGCCATGAGAGTCTTGAGTACCAGCACTGACCTGGAAGCAGCAGTGGCTGACGCTCTG
Seq A exon
GTAAGGGGCACAGGGAGGATGGAATCACAGTTACTCATCTGCACTTGATCTTAGCCAAAAGGCCGAGAGGTGATACAGTTACTCATCTGTATATTCTGTCTTAACATCAAAGTGCCCTCAAGTAAGGTGACTAAGTTGTCTTCTGTACTCTTCTTCCAAAGTGTGTGAGTAGGGCTGGGATGATGGCTCAACCACCAAAGCACAGGCAAGCGTGAGTTCAGATGCCAGGTTCAGGGGTGACCTGCCTGTATTCCCAGAGAGCAGAAACGGGGTCCTCTGAGCCAGCTGGCCAGCTAGACTCCATACTAGTACTCTGTAGGATCTCATGAGAAACCCTGTCTCAAGTGAGTAAGGTTAGGACAGCCAAGGCCGTGCTCACAAAGCACATATGTATTCACAGGAGAAAAAGAAAAGCTATGTAAAGTTTATTGTTATTTTTTCCTCTCACACTTTTTACGACACATAGTCAAATTGGCCTTCCAGGAAACAGCGGCGTCAGGAACCTGACCCATGCTTCTGGGTATTCAGGAAATCTTGATGGCATTGGGCTCCCCACATGTCATCTAGCTATGGCTTTTGTTTTCTGTATATCATAGCTTCTTTTCCCACACTGTTTCCTGGTTTCCACCCCGTTGCCTCTGTTGCTTCACAGGCTTTGAGACCGGAAACTTACATTTATTCTGTTATATGAATCTGACTTAGGAGAGTCACCCACACCCCCCAAAATGGATCAACTTAGTATTTGAGAAAAATAGCTGAGACTGGAGAGCTAGCTAATAAAACACTTGTCGTGGAAGCACAAGGACCTGGGTTAAAGCCCAGAACCTGTGTATATAAAGCACCATGTGTGGTAGTACACCCCAGGCATCCCAGTGCCAGGGAGATGGAATGGCTGGCAGCAAGGTCAACAGCATCTGAGGAATGGCACCCCAGTTTGACTCTCTCTCTCTCTCCCTCTTTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACAGAAAATTTTCCTAAATGTTAAGATTTAATCTCTAAAGTTGTAAAGCATGGGGGGGGGGCGGATTTTGCATATTAATTATAATATTTGGGGGAAAAAACATCAAGTGCACATGGCTCCTTCAGTCTGTGGCACAGCAAATATTCCTGTTGGGTCAGCTTCTGCTGAACTTGCCTCCTGGCTGGTAGAAAGAGTGCATTAGAAATACATGCTCTTCAAAATGTTCTCTTTGGTGCCCTACCCACTGCTGCTCTAAGATGTATTCTCTTGTTAGGAAACAAGCAAACATAACAACACTACCCTCCTTTTCAGTCTGAAGTTTTGAATTTAGCCTGTGCCACCTGATCGGTGCTTTACTGCCCTTGGCTGCCTGCTCTTGTCACTTTGCATCTCAGCTTTGTCTGTTCCTCGCAGTCAGGTTCTTTCCTTAGTGTGCATCTGAGAGGAAGCCGTTAGCCACTCTCAGACTCTCTGCTCAGCAGCCAGCCTGGCCAGCCTACTCATCAGCCTTATGCGCAGAAGGACTTTTTTCTGGCAGGTACCAAAGTATGTAGTACTGTTCTAACCATGGATTTAACCTGAATCAAGAGCTGAGACAGAATCAGGCTTTTTTTTTCAAGTCAAAGCATCCTGAATGTGCCTTTTAGTTATTCAGAGGCCCTAGCAAGTGGTGGTCAGGGGGCTAGGAAACAGTGGAGCTGAACCCTCAGCTAAAAGGGACTTCTAATTAGAGTACACACACACACACACACACACACACACACACACACACACACACACACACATATGTAGTTATAGTTATTTAAAGCCCACATAAGGGACCATGTGCAAAGTTCTTCAAGGCAGAGTGGCGCTCTAGAGAATCAAATCTTTCTGATTCACTTGAGTTCTTCTCTGGACCCCAGCTCCCATCCTGTCCTTGCCCTTGCTCCTTTGTCCACTGTGTCTGGTCTCTCTGAGTGACCTGCTTTTGAAGAGGAAATTGCCAGAATTTTAGACAATCATTGCCTACAGAATGGAAGCCCTTGGGGTAGGCAGATCTCATAGGGACAAACAACGGGTATGGGAAATCTCAGCGAGACTTCTGCCGTGAACCAGAGAGCCTGGGACAGAGCCTGAAGGACTAGGACATGCCATTCAGACCGCAGCGTGCTACGATCTACTCCAAACCGCTTGCTGACCTGTGTTTTTGGTTTGCTAAGAGATGTTGCTATACACTTTTGTTGCCAGAACAATCCCCACATATGCTTCTGACATAATTCTCTATGCTTTTTCCCCATCCTTCAATATTTTCCTGCCTACAGCTGTTAGGAGACGCCAGGAGCAAGGTACCCGTGCTTTAACTTTTGTTTACAACTTTTTTTTTTCTGTTGCAAGTCTATTTCTTTTAGAATTTAGTTGAACGCAGCACAAAATGTAGTTGTAGTTAGAGACTCTGGTCTCAGTGTTTCTGGTAAGCATTCTGATTTGCTGCCGTGTGATGGAGTCCCGGCCCCTCTCATCCTTCTGGGAAGGTGCTCTGTTTTTATGTCACTCTGCTCCCTGTCCTTCCTGTGTTTTATTAACTCAATTTGTGTCTATTTTGTAATCATAACTTAATGAACAGATCTGTCGACCAACCTTTTCTTATTTTAGGAAATCTGGCTCATATGTGAGTGTAAATCATATATAGGTTATCATCTAAATCAAAACTATTTTTAAAGGTGCAAGGGGATGCTGGGAAGAACTTTTGCTGGGACAGAAGGCAGTACTTTCCTGAGCAAGCTGGGATTCAAAATAATTTGAATAGTTTGAAAATTAAAACTATTTGTGTGGCTTGAGCCAGTAACTGCATTTAGGAAACATATGTGCCAACCTTACCATACTAGGTATGGGTTTAACACACTGTCTTGTATTCAGAGTGTGAGAGGAGAATGAAGGGGGCTATTGTAGTCTACTTTAAAAGAAACCTATTGCCAGGCGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGTTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAAAGAGAAACCCTGTCCAAAAAAAAAAAAAAAAAAAAAAAAGAAACCTATTGATGTTAAAAACCAAATGATGCTGTTAACTAAAATGGCTCATACAGTCTGCGGCCCTTTTGCATAGAATATCTCCACTACTAACAAACATTTCAACTGCAGACTTCTTAAGCAAGCATGATTGTTCAAGCAAGCACACCCACAGACCATGCTTAAGGGCTGCACATGTGAGCACAGCTGCAGTGAATTGTTGCTTTGTCCTTCAGAGTTTCATTAAACCCTTACACTAGTCTGCTGAGGCAGGTGTACTGGTTACCTTCCTTGAGAGGAGTCACCAAGGCAGAAACTGACACAGTTGTTCAGCAGTAATACTAGGATTGGCACCAAAATCCATTGGGCTGAAAAATCCCCTTTCCACCACCCCCATACATACACACTTTCTACAAGACAACAAATCCTTCTTCACAAAAATGTGCAGCATGTCACTTATGTCACCTACCTTGACACTTCTGTTTTTAATTCCCTAATTTGTAAGCACAGAAAATGTGTGTGTGTGTGTGTGTGTATGTTTCTTTTTATATTTAACTCTGCACTGTAGTTTTTAACGGATGAGTCATGACCGGTTCACCTTCCCACTTCTTCCTTCCCCTGCTCCTCGTGGGACATTTTAG
Seq C2 exon
AAGAAGCCTGTGAGAAGGAGATACGAGCCCTATGGAATGTACTCTGATGATGATGCCAACAGTGATGCCTCCAGCGTGTGCTCTGAGCGCTCATATGGCTCCAGGAATGGTGGCATTCCCCATTATCTGCGGCAGACTGAAGATGTAGCAGAGGTTCTCAACCATTGTGCCAGTTCCAACTGGTCAGAACGGAAAGAGGGGCTCCTGGGCCTGCAGAACTTACTGAAGAGCCAAAGAACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302-Clasp1:NM_001081276:24
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116403=TAN=PU(67.3=45.1)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: