GgaINT0049994 @ galGal3
Intron Retention
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27702442-27703630:-
Coord C1 exon
chr7:27703607-27703630
Coord A exon
chr7:27702687-27703606
Coord C2 exon
chr7:27702442-27702686
Length
920 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
CTGAGTTTCCCCTTTCCCAGAAA
3' ss Score
6.73
Exon sequences
Seq C1 exon
CTGTTAGGAGACTCCAGGAGCAAG
Seq A exon
GTACTAGTGCTTTCTTGACTTTTTATTTCTACTTTCAACTTTCCCTACCCTATTGCTAACACCCATAATACCGCACTTGAGTTAATTTCTTCACTTCAATCTTGCAGTCCTAGTGTGAGCAAAACTCTATTGGCTTCACAAGTCTGAGAACTGCAGGACTGGACACTGGAAGGAATTTTGTATCAAAAGTTTTAGAATTTAGGCAGTCTTTTCTGATACGTTGTCTTACTAATTTTGTTCTGTTAAGATTTATTTAAAAGTTTATTTTAGTAGTACACGATTTGTAGAGCTATAAAAATTATTGTAATATCCACTCTGTAAGGACTGAGGTTGTCAAGATGTGGTCCGCTTATCCCATGCTATGGGAATGAGTGGGATTTGATTACTCATCTCCTTTAGGAACCTCTGTAAATAAATGTAAAAAAAATCAGCTCAAACTAACAGAGAAATTAGACTCTCCTGTATCCCAGTGCATTTCTAGAGTTGCTCTGTTATCAGTATCAAAATGACTGTACGTGCCAGCACAGATTCCTACAGTTCTTTCTTCTTTATCTTTATTATTTTTTTTTAATAGAGGCTACCTCATCACAGAACATGCAGCAGTGGAACTGACTATTATTTATAACAAAACTTATGATTTCATTAGTTACAGCTAATTCCACTGACCATGAGTACTGAGCTTTCATGCTGGGAAAGGCAGGTCCTGCTCTCCCTAGTCACTCATGCTCATTGAAATCAGTGAGATCTGTCTCACTCTGCTGAGAGAGATAAGTGGGCAGTGCTCAGGGATGTCTTTAAAAACATGTCACTATAACAATAGCATTAATCTTCCTTGATTAATGATTATGGGTAGAACGTTTTTCTTCTGGAAGTGATGTAACTGTATATAATTTATTCAGTCTGAGTTTCCCCTTTCCCAG
Seq C2 exon
AAAAAGCCAGTGAGAAGAAGATATGAACCCTATGGGATGTACTCTGATGATGACGCTAACAGTGACGCATCAAGTGCTTGCTCAGAGCGCTCCTATGGTTCCAGGAATGGAGGCATTCCACACTATCTGCGGCAGACCGAAGATGTGGCTGAGGTCCTGAACCACTGTGCCAGCTCCAACTGGTCTGAAAGGAAGGAGGGCCTCATAGGTCTCCAGAACTTACTGAAAAGCCAGCGGACGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645:ENSGALT00000019030:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.774
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116403=TAN=PU(67.3=45.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAGGAGACTCCAGGAGCA
R:
CGTCCGCTGGCTTTTCAGTAA
Band lengths:
263-1183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]