BtaINT0038846 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73552545-73556040:-
Coord C1 exon
chr2:73555937-73556040
Coord A exon
chr2:73552790-73555936
Coord C2 exon
chr2:73552545-73552789
Length
3147 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CCCCTCCTTGGATCTGGCAGAAG
3' ss Score
4.97
Exon sequences
Seq C1 exon
ACCGCTTTGGGCTCGGCCAGGCAGGAAGAATTCCTGGTTCTGTGAATGCCATGCGGGTTCTGAGCACCAGTACAGATCTGGAAGCTGCTGTTGCTGATGCTTTG
Seq A exon
GTAAGAGGCCCGATGTGTGTGGAGTCTCTTTGAATTACTGACCTACATTTTTCTCTGTCTTCACAGGAAGTAGCCTCCAAATCAGGTCACTAAGTCTTCTTTGATACTCTTTGAAATCGTGTAAATATTGGGTAAATTTAGGTTATTCCTTTCTTCTTAAACTTTTAACCCTGTACGTAAGTGAAGACTGGCCTTTCGAGCCACGTTAACGTCAAGAGTGTCTTCTCTGCTCTTCAGTAACAAGGAGGTTTGGATGACATTGGGCTTCTCTGATGTCATTGGGCTTCTTCTTTTCCTTTTTTATCCATTTTTTTTCAGCATTTCCTTTTTGCCCCTTCTTTTGCTTCTGTTGCTTTACGGGCTTTGATGGCATAGCCTAAGCACATCATTGTATAATAGTAGGTCATAGACTTTGTGGTTTGAAACTCTTGCATTCCATTACCATCACTAGTTGTTCCGTATGATTTTGTTTATTTGTTTGAATGAGTCCTTAAGTCATTATTTACAGAAACTTTCCCAGATTTTAAGATGAACTTTTTGAGAATATGAAGGACTAGTGGAGTATGTTTTTTTCTTTCATTGTTATAATGTAATATTTTAAAAAGCAATATAAAGTGATTAGAGGTCCTTAAATTTATGCTTCCAGCAAAAAGTTCCTCAGTAGAATCAGCTTGTGGTCAATTTGCCTTATAAAGTTGCATTTCAGCGGGTAGTAACACAGCCTCTTGTTTCTTCTGGTTTATGTGCTCAGCATTTAAAATAGACATGCTTTAGAGAACTGTCTGATCTCTGGTGTTACTTGTACTGTTTTAAGAGAAAAGCATTATAATACCCTGCTTTCAGATCCTGAGGTTTTAAATCCAGCCCTGTTTTCATTTGATCAAAACTTCATAGTGTGTGGCTTCAGGAATTCTACCTCTCATCCCTCCTGGCCCTCCCTCATTTATTCTTGCTCAGCCAGGTTTCTCTGACAAACATCTGTGAGCAAGCAGTCTTCCAGTCTCCTAGTGCTTTCCTGATGAGGGCTGCCCCTCATCAGCCAGGTCTGTTCATCAGCCTTGGGTGTGGAAGGACTCTTCCTGGCAGGTACTGGAGTTCAGGATAATTGCTTTAAGTAGGACTTCAAGAGTCACAAGAGACTTTATCAAGTCAAGAGATTTTATGAAGCGGTTTTCCTTCCAAGTTGCAGCATTTGGAATTTGTTTCTTACCTATTCTGGGACTTTTAAGAAGTGGGAACCAGTGGGGTGAGAAGTGATGGATGTGCAAAGCCCTTGGTGAGACAGCACTTCGGTTGGGGTTGGGGAAGGGGGGAGGGCTGTGTTTCCTTGTTTCTTAAAGATCCGCCCCAGGAACACTGCACAAAGTGCCAGGAGGCAGAGCAGGACTCAAGAATTTGGGCTTTGCCGTTGCCTGACTTGGGCTTTTCTCTGAGCTGTGGCTCTCCTTACACTCCCACTGCCCTTACGATATTTTGTCCAAACCTCTTGGTCTCTTCCCATGACCTGCTTCAGAAGACAGCGCCAGGATGGTACTCAGTCCCTGCCTCACAGAAAGGAAGTCCCGGGACAGAAGCTTTCCTAGGAACAGACAACAGAGTTAATAGCAACATTTGGAATGTGCCTCAGTGGTGTGGGGAGAGTTGCAGCAAAGAATTACAGAGCAGATACTGGAATGTCTCATAAGAGGTGCAAGAGGGTTAGGAAATGCCATTGTGAAAGCATTCTTTGTTATTTGCTTGATATGAATTGCTTGCTAACCTGTATTTTTGGTTTGCTAATATATGTTTTGCTGTACACTTTTGTTGCAAGAACAATCCCCACATATGCTTCTGACATAATTCTCTATGCTTTTTCCCCATCCTTCAATATTTTCCTGCCTACAGCTGTTAGGAGACTCCAGGAGCAAGGTACCAGTGCTTTAACTTTTGTTTTATAACTTTTTTTTTTCTGTTGTGAGTATATTTCCTTTAGGAGCTGGTAAAAGCAACAAAAATGTAGCCTAGTGTAGAAGTTCTGTTCTGAACTGTGATTTTGTGAAAACTAGTGGTGCTTTTGCTAGTGATAGAACTGGTCATATCTCACATGTGTTTGAGCATTGTTTTCCAACATCAAGTTCTGTCCATTATCATCCTAGTGTTTCATTTTACTAACCTAGGTTTTGTCTCACGTCATTATTTCATGAGTGGATACATTCAGCATTTTCCTTATCTTAGGAATCTAGTTCATGTATAAATGAGATGGCTGTGTAATTATCATCCTAACAAGGATACTTTTAAGCATGAGGGAGGGTGCCATTAATAATTAACTGGGGACAGTAGGTGGAAGGCAGAGCCGTCCCAGGTAAGTTGTGATGTGTGTACAAGTCACATTCCTAGGAAGTTACACTGGTGCAGTTTAAGCCCGTAGCTACTTGTTTTCCTCTTAGAGAAATTAAATTTTATCTGTTTTATATAGTTCTTGCTATATAATTTTGGAATTTAACTTAATAGTTTTATATTCAGGGTAAGAGACATGAATGAAGTGGGTATTCTAGTCTAAGGAGGCCTAGTAGTGTTGTAAAACTGTGAGTCATTAATAAAAATGGTATAGATTTTTTGAGAATCCTTTTATATAGGACACTACACCACTGACATTGCAGTGTCAGATGTTCTTAAGGGAGCATGAATTTTCAAACAAATTTACTTAGAGACCATGTTCAAGACAGGTTGCTTTTGGTTGGGGAAGGGTGGTGGGCTCACAGACTCAGTGTGTCAGGTGCTGAGCTAGGCTGTTTAGCATATAATTCCACTTAATCCTGACAACAAGCCTCTGAGAATGGTAATCAGTATTATCTCAGGGAAAGGTTAGGAGGCTTTCTGAAGTCACATGGTGGGTCCATGTTACTGAGAGGGCCGTACACCGCACTAAAGATCACGCTCCTTCTTCTGCTGTGGGTTGCTCTGCTTACTACTCACTCTACCTACCAGAAGTCTGCTGTTCTGTTTCCATTTCCCTAATCTGTAAGCAAAGGGAAGGTGTGGGTGCATGTGCCCATGTGTGTGTTTGTGTGTGTGTGTATCTACATTTAACTCTTCGTTGTTGATTTTGTGTGGTAAGACTCATGTTGCCTTTCCATTTCTTCCCCAACCCCTCCTTGGATCTGGCAG
Seq C2 exon
AAGAAGCCTGTGAGGAGAAGATACGAGCCCTATGGGATGTATTCTGATGATGACGCCAACAGCGACGCCTCCAGCGTGTGCTCGGAGCGCTCGTATGGCTCCCGGAATGGGGGTATCCCCCACTACCTGCGCCAGACAGAGGACGTGGCTGAGGTGCTCAACCACTGTGCCAGCTCCAACTGGGCTGAGAGGAAGGAAGGGCTGCTGGGTCTGCAGAACCTGCTAAAGAGCCAGAGAACGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781:ENSBTAT00000065657:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.707
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123483=CLASP_N=PU(16.2=46.3),PF116403=TAN=PU(51.4=45.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]