RnoINT0036765 @ rn6
Intron Retention
Gene
ENSRNOG00000002376 | Clasp1
Description
cytoplasmic linker associated protein 1 [Source:RGD Symbol;Acc:1310970]
Coordinates
chr13:34515329-34519259:+
Coord C1 exon
chr13:34515329-34515432
Coord A exon
chr13:34515433-34519014
Coord C2 exon
chr13:34519015-34519259
Length
3582 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
GTCCTCGTGGGACATTGCAGAAG
3' ss Score
2.09
Exon sequences
Seq C1 exon
ATCGGTTTGGGCTGGGCCAGTCAGGACGGATCCCTGGTTCTGTGAGCGCCATGCGAGTCTTGAGTACCAGCACAGACCTGGAAGCCGCTGTGGCCGACGCTCTG
Seq A exon
GTAAGGGGCACAGGGAGGATGGAGTGAGTCACAGTTATTCATCCATAGTTTTCTGTCTTAACAAAAAATTGATGTCAAGTCAGATGACTAAATTGTCTTTTAAACTCTTCTTCCAAAGCGTGTGAATAGGGCTGGGATGATGGGGTCAACCATTAAAAGCATAGGCAAGGGTGGACCAGAGTTCAGATGGCGGGGGGGGGGGGGGGCTGTATTCCCAGCATTCCAGAGGCAGAAATGGGATCCTCTGAGCGATCTGGTCAGCTAGACGACATACTAGTTCTCTGTATTGTGAGAAACCCTGTCTCCAGTGAGGAAGGTGTTAGGGCAGTCAAGGAAGACCCTTGACAGCCACGCTCACAACCACATATACATTCACAGAGAAAAAGTTATGTAAAGTTTATTTTTTTCCCTCTCACACTCTTTACAACACAGAGTCAAATTGGCCTCCTAATAAACAGCATCGGCAGGAAGTCTGGGTGGCCTTGGGTTTCCTACATGCCATCTCACTATCCTCTCCCCCCCGCGTATCATAGCTTCTTTCCCCACACCATTTCCTGTTTTCCATCCTGTTGCCTCTGTTGCTTTGATAACAAAGCTACATGTATGATTGTAGCAGTGGATGATAGACTCTGAGACCTGAAAGTTACATTTATTCTGTTATGTGATTCTGACATGGGAGAGTCACCTACACCCCAAAAAATGGATCAACGTAGTATTTGAGAAAAGGAGCCAGGATCAGGGAGATAGCTAAGCAAACATTTGTCATGAAAACACAAGGACCCAGGTTAAGCCCCAGAATCCATGTATAAAGCTGTGTGTGGTGGTACACCCTAGTCATCACAGCACCAGAGAGATGGAATGGGCGCCTGGCTTGCCAGTCCAGCTGAATCCATGATTCAGGTAAAAATGAGGCTCTGTCTCAAAAACCAGGTAAACGTCTAAGGAATGGCACCCCAGTTTGACATCCCTCCCCTCCCTACTTACACACAAAGAAAAATTTTCTAAATGTTAAGATTTAGTTGTAAAGCACGGGGGGGGGGGGGTGTGCATATTATGTTATAATATTTGTGTGGGGGGGGATCAAAGGCACATGGGTCCTTCAGTCTGTGGCACAGCAAACATTCCTGTTGGATCAGTTTGTGCGGAACTTGCCTCCTGGCTGGTAAGAACAGCCTCACATACCTAGGTCATGTACCCAGCACTTGAAATGGTCTCATCAGTGCCCCACCCACTGCTGTTCTAAGATGTATTCTCTTGTTAGGAAACAAGCAAACATAACACTACCCTGCTTTTCAGTCTGAGGTTTTGAATTTAGCCTGCACCACCCGATCAGTGCCTTACGGTCTGTGGCTACTGTGAATCCCGCTCTTGGCACTTTGCGTTTCTGCTTTGTTTGTTCTGCTCAGTTAGGTTCTTTCCTTAGTGTGCATCTGAGAGGAAGCTGTCAGCCACTCTCAGATACTTTCTGCTCAGCATCCAGCCTGGCCAGCCTACTCATGAGCCTTATGAACAGAAGGACTTTTTTCTGACAGGTACTGGAGTGTCCAGCACTGCTCTCACCATGGTTTTAACCTGAGTCAAGAGCTGGGATAGAATCCAATGAGGCTTTCTTGTTCAAGTCCTAGCATTCTGAATGTTCCTTTTATTTATTCAGAGACCCTCGAGAGTGGTAGTCAGGGGGCTAGGAAACAGTGGGCTGAACCACTGGCTGAAAGGGACTTCCAATTAGAGCAGGGTTTGTTTGTTTTTAGTTACTTAAAACCCACATAAGGAAGTGTGTGGAAAGTTCTACAAGGCAGAGTGGAGCTCTAGAGAGTCAGACCTTTCTGATTCACTTGAGCTCTCCTTTGGGCCCCACTCCCATTCTGTCCTTTCTGCCCTTGCTCCTTTGTTTGCTGTGTCTGGTCTCTTTGAGTGACCTGCTTCTGAAGAGGAACAGGCCAGAATGGTAGGGAATCTCTGCCTACCAAATGGGAGCCTCTGGGGTAGGCAGATCTCATAGGGACAAACAATGGGTATGGGAAATCTCAGCGAGAGTTCTACCATGAAATAGAGAGCCAGGGACAGATCCAGAGGGACTAGGACATGCCATTTGGAAGGCAGTCTGCTACGATCTACTCCAAACCAACTGCTTGCTGACCTGTGTTTTTGGTTTGCTAAGAGATGTTGCTGTACACTTTTGTTGCCAGAGCAATCCCCACATATGCTTCTGACATAATTCTCTATGCTTTTTCCCATCCTTCAATATTCCCTGCCTACAGCTGTTAGGAGACGCCAGGAGCAAGGTACCCGTGCTTTAACTTTTGTTTACAACTGTTTTTTCTGTTGCAAGTGTATTTCTTTTAGAGTTTAGTTGAAAGCAGCACAAAATGTAGTTGTAGTTAGAGATTCTGGTCTCCATGTCTCTGGTAAGCATTCTGGTTTGCTGCCGTGTGATGGAGTCCATCCCCTTTTGCATCCTTCCGTGAGGCTGCTTTGTGTTTGTCACTCTGCTCCCTGTCCTTCCTGTGTTTCATTTTATTAACTCAGTTTGTGTCTACTTTATAATCATAACTTCATGAGCAGGTCTATCGGCCAACCTTTTCTTTTTTGTTTTAGGAAATCTGACTTATATGTAAGTGTAAATCATATGTAGGTTATCATCTAAATCAAAAACATTTTTAAAGGTGAAGAAGGGATTCTAGGAATAATTTTTGCTGGGACAGAAGGCAGTACTGTCCTGAGCAAGCTGAGATTCAAACTAATTAACATTGTTTGAAAATTAAAACTGTTTATGTGGCTTGAGCCAAACTGTGTTTAGGAAACATTCTGTTTCAAACTTCCCATACTATATATGGGTTTAACACACTGTCTTATATGGAGAGTGTGAGAGGGGAATGGAGGGGGCTATTGTAGTCCTCATTCATGTTAAATGTAGAAACCCATTCATGTTAAAAACCAAATGATGCTATTAACTAAAGTGGCTCATACAGTCTGGGACCCTTTTGCATAGAATATCTCTACCACTAACATTTCAACTGCAAACTTCTAAGCAAGCATGATTGTTCAAGCAAGGGCAGCCACAGAACATGCTTAAGGTAGATCGCTCCGCGCTCTGCAGGGCTTAGCATGTGCACACAGCTGCAGTGAATGGGTGCTTCGTCTTTCAGAGCTTCATTAAACCCTCACACTAGTCTGCTGAGGCAGGTGCGGTGGTTACCCTCCTCGAGAGGAGTCACCAAGGCAGAAACTGACAGTTTTTCAGCAGTAATACCAGGATTCACACCAAAGTCCATCCTGCTGAAAATCCCCTTTTCTACCCTGCCCCCACATATATACATACTTTCTACAAGATGACAAATTCTTTCTTCTTCACAGAAATGTACAACATGACAACATCACCTACCTTGACAGTTCTGTTTTTAATTTCCTAATCTGTAAGCATAGAAAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAACTCTACACTGTAGCTTTTAATGGATGTGTCATGACTGGTTTCGCCTTTCCACTTCTTCCTTGCCCTGCTCCTCGTGTCCTCGTGGGACATTGCAG
Seq C2 exon
AAGAAGCCTGTGAGGAGGAGGTACGAGCCCTACGGAATGTACTCTGATGATGACGCCAACAGTGATGCCTCTAGCGTGTGCTCTGAGCGCTCATACGGCTCCAGGAACGGTGGCATTCCCCATTATCTGCGGCAGACTGAAGATGTAGCAGAGGTTCTCAACCACTGTGCCAGTTCCAACTGGTCAGAAAGGAAAGAGGGGCTTCTAGGCCTGCAGAACTTGCTGAAGAGCCAAAGAACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002376:ENSRNOT00000061513:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123483=CLASP_N=PU(16.9=47.0),PF116403=TAN=PU(50.7=44.6)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]