GgaINT0049994 @ galGal4
Intron Retention
Gene
ENSGALG00000011645 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr7:25628285-25629473:-
Coord C1 exon
chr7:25629450-25629473
Coord A exon
chr7:25628530-25629449
Coord C2 exon
chr7:25628285-25628529
Length
920 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
CTGAGTTTCCCCTTTCCCAGAAA
3' ss Score
6.73
Exon sequences
Seq C1 exon
CTGTTAGGAGACTCCAGGAGCAAG
Seq A exon
GTACTAGTGCTTTCTTGACTTTTTATTTCTACTTTCAACTTTCCCTACCCTATTGCTAACACCCATAATACCGCACTTGAGTTAATTTCTTCACTTCAATCTTGCAGTCCTAGTGTGAGCAAAACTCTATTGGCTTCACAAGTCTGAGAACTGCAGGACTGGACACTGGAAGGAATTTTGTATCAAAAGTTTTAGAATTTAGGCAGTCTTTTCTGATACGTTGTCTTACTAATTTTGTTCTGTTAAGATTTATTTAAAAGTTTATTTTAGTAGTACACGATTTGTAGAGCTATAAAAATTATTGTAATATCCACTCTGTAAGGACTGAGGTTGTCAAGATGTGGTCCGCTTATCCCATGCTATGGGAATGAGTGGGATTTGATTACTCATCTCCTTTAGGAACCTCTGTAAATAAATGTAAAAAAAATCAGCTCAAACTAACAGAGAAATTAGACTCTCCTGTATCCCAGTGCATTTCTAGAGTTGCTCTGTTATCAGTATCAAAATGACTGTACGTGCCAGCACAGATTCCTACAGTTCTTTCTTCTTTATCTTTATTATTTTTTTTTAATAGAGGCTACCTCATCACAGAACATGCAGCAGTGGAACTGACTATTATTTATAACAAAACTTATGATTTCATTAGTTACAGCTAATTCCACTGACCATGAGTACTGAGCTTTCATGCTGGGAAAGGCAGGTCCTGCTCTCCCTAGTCACTCATGCTCATTGAAATCAGTGAGATCTGTCTCACTCTGCTGAGAGAGATAAGTGGGCAGTGCTCAGGGATGTCTTTAAAAACATGTCACTATAACAATAGCATTAATCTTCCTTGATTAATGATTATGGGTAGAACGTTTTTCTTCTGGAAGTGATGTAACTGTATATAATTTATTCAGTCTGAGTTTCCCCTTTCCCAG
Seq C2 exon
AAAAAGCCAGTGAGAAGAAGATATGAACCCTATGGGATGTACTCTGATGATGACGCTAACAGTGACGCATCAAGTGCTTGCTCAGAGCGCTCCTATGGTTCCAGGAATGGAGGCATTCCACACTATCTGCGGCAGACCGAAGATGTGGCTGAGGTCCTGAACCACTGTGCCAGCTCCAACTGGTCTGAAAGGAAGGAGGGCCTCATAGGTCTCCAGAACTTACTGAAAAGCCAGCGGACGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645:ENSGALT00000019030:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.695
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123483=CLASP_N=PU(16.4=46.3),PF116403=TAN=PU(50.7=45.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAGGAGACTCCAGGAGCA
R:
CGTCCGCTGGCTTTTCAGTAA
Band lengths:
263-1183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]