MmuINT0036737 @ mm9
Intron Retention
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:120435843-120438275:+
Coord C1 exon
chr1:120435843-120435946
Coord A exon
chr1:120435947-120438251
Coord C2 exon
chr1:120438252-120438275
Length
2305 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CAATATTTTCCTGCCTACAGCTG
3' ss Score
8.25
Exon sequences
Seq C1 exon
ATCGGTTTGGGCTGGGCCAGTCAGGACGAATCCCTGGTTCTGTGAACGCCATGAGAGTCTTGAGTACCAGCACTGACCTGGAAGCAGCAGTGGCTGACGCTCTG
Seq A exon
GTAAGGGGCACAGGGAGGATGGAATCACAGTTACTCATCTGCACTTGATCTTAGCCAAAAGGCCGAGAGGTGATACAGTTACTCATCTGTATATTCTGTCTTAACATCAAAGTGCCCTCAAGTAAGGTGACTAAGTTGTCTTCTGTACTCTTCTTCCAAAGTGTGTGAGTAGGGCTGGGATGATGGCTCAACCACCAAAGCACAGGCAAGCGTGAGTTCAGATGCCAGGTTCAGGGGTGACCTGCCTGTATTCCCAGAGAGCAGAAACGGGGTCCTCTGAGCCAGCTGGCCAGCTAGACTCCATACTAGTACTCTGTAGGATCTCATGAGAAACCCTGTCTCAAGTGAGTAAGGTTAGGACAGCCAAGGCCGTGCTCACAAAGCACATATGTATTCACAGGAGAAAAAGAAAAGCTATGTAAAGTTTATTGTTATTTTTTCCTCTCACACTTTTTACGACACATAGTCAAATTGGCCTTCCAGGAAACAGCGGCGTCAGGAACCTGACCCATGCTTCTGGGTATTCAGGAAATCTTGATGGCATTGGGCTCCCCACATGTCATCTAGCTATGGCTTTTGTTTTCTGTATATCATAGCTTCTTTTCCCACACTGTTTCCTGGTTTCCACCCCGTTGCCTCTGTTGCTTCACAGGCTTTGAGACCGGAAACTTACATTTATTCTGTTATATGAATCTGACTTAGGAGAGTCACCCACACCCCCCAAAATGGATCAACTTAGTATTTGAGAAAAATAGCTGAGACTGGAGAGCTAGCTAATAAAACACTTGTCGTGGAAGCACAAGGACCTGGGTTAAAGCCCAGAACCTGTGTATATAAAGCACCATGTGTGGTAGTACACCCCAGGCATCCCAGTGCCAGGGAGATGGAATGGCTGGCAGCAAGGTCAACAGCATCTGAGGAATGGCACCCCAGTTTGACTCTCTCTCTCTCTCCCTCTTTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACAGAAAATTTTCCTAAATGTTAAGATTTAATCTCTAAAGTTGTAAAGCATGGGGGGGGGGCGGATTTTGCATATTAATTATAATATTTGGGGGAAAAAACATCAAGTGCACATGGCTCCTTCAGTCTGTGGCACAGCAAATATTCCTGTTGGGTCAGCTTCTGCTGAACTTGCCTCCTGGCTGGTAGAAAGAGTGCATTAGAAATACATGCTCTTCAAAATGTTCTCTTTGGTGCCCTACCCACTGCTGCTCTAAGATGTATTCTCTTGTTAGGAAACAAGCAAACATAACAACACTACCCTCCTTTTCAGTCTGAAGTTTTGAATTTAGCCTGTGCCACCTGATCGGTGCTTTACTGCCCTTGGCTGCCTGCTCTTGTCACTTTGCATCTCAGCTTTGTCTGTTCCTCGCAGTCAGGTTCTTTCCTTAGTGTGCATCTGAGAGGAAGCCGTTAGCCACTCTCAGACTCTCTGCTCAGCAGCCAGCCTGGCCAGCCTACTCATCAGCCTTATGCGCAGAAGGACTTTTTTCTGGCAGGTACCAAAGTATGTAGTACTGTTCTAACCATGGATTTAACCTGAATCAAGAGCTGAGACAGAATCAGGCTTTTTTTTTCAAGTCAAAGCATCCTGAATGTGCCTTTTAGTTATTCAGAGGCCCTAGCAAGTGGTGGTCAGGGGGCTAGGAAACAGTGGAGCTGAACCCTCAGCTAAAAGGGACTTCTAATTAGAGTACACACACACACACACACACACACACACACACACACACACACACACACACATATGTAGTTATAGTTATTTAAAGCCCACATAAGGGACCATGTGCAAAGTTCTTCAAGGCAGAGTGGCGCTCTAGAGAATCAAATCTTTCTGATTCACTTGAGTTCTTCTCTGGACCCCAGCTCCCATCCTGTCCTTGCCCTTGCTCCTTTGTCCACTGTGTCTGGTCTCTCTGAGTGACCTGCTTTTGAAGAGGAAATTGCCAGAATTTTAGACAATCATTGCCTACAGAATGGAAGCCCTTGGGGTAGGCAGATCTCATAGGGACAAACAACGGGTATGGGAAATCTCAGCGAGACTTCTGCCGTGAACCAGAGAGCCTGGGACAGAGCCTGAAGGACTAGGACATGCCATTCAGACCGCAGCGTGCTACGATCTACTCCAAACCGCTTGCTGACCTGTGTTTTTGGTTTGCTAAGAGATGTTGCTATACACTTTTGTTGCCAGAACAATCCCCACATATGCTTCTGACATAATTCTCTATGCTTTTTCCCCATCCTTCAATATTTTCCTGCCTACAG
Seq C2 exon
CTGTTAGGAGACGCCAGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302-Clasp1:NM_029709:22
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: