DreEX0002963 @ danRer10
Exon Skipping
Gene
ENSDARG00000025320 | COL21A1
Description
collagen, type XXI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:17025]
Coordinates
chr13:1678372-1682852:+
Coord C1 exon
chr13:1678372-1678449
Coord A exon
chr13:1679460-1679468
Coord C2 exon
chr13:1682769-1682852
Length
9 bp
Sequences
Splice sites
3' ss Seq
TGGCTCCTTTCATTTTTTAGGAT
3' ss Score
12.06
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
TTTGAAGTACAAAAACTCAGAATCTACTGCGACCCGGAGCAGAACAACAGAGAAACCGCCTGTGAAATACCTGGAGTT
Seq A exon
GATGGAGAG
Seq C2 exon
TGTGCTAATGGACCAGGAGACATCGATCCAACCCCTGAGCCCTGCATCTGCCCACCAGGGCCACCCGGTACCCCTGGAATGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025320-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(3.6=15.4)
A:
NO
C2:
PF0139113=Collagen=PU(17.5=39.3)
Main Inclusion Isoform:
ENSDART00000029343fB283
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAATCTACTGCGACCCGG
R:
TGGATCGATGTCTCCTGGTCC
Band lengths:
92-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]