GgaEX1016513 @ galGal4
Exon Skipping
Gene
ENSGALG00000016292 | COL21A1
Description
collagen, type XXI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:17025]
Coordinates
chr3:86646594-86650890:+
Coord C1 exon
chr3:86646594-86646671
Coord A exon
chr3:86648898-86648906
Coord C2 exon
chr3:86650807-86650890
Length
9 bp
Sequences
Splice sites
3' ss Seq
GATGTTTTTTCTTGTTTCAGAAT
3' ss Score
10.14
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TTCGATATACAAAAACTGCGAATCTACTGTGACCCAGAGCAAAATAATCGAGAGACAGTCTGTGAGATCCCAGGATTT
Seq A exon
AATGGAGAG
Seq C2 exon
TGCATGAATGGCCCAAGCGATGTAGGCTCCACACCTGCCCCCTGCATATGCCCTCCAGGGAAACAAGGACCTCCAGGCCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016292-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF133851=Laminin_G_3=PD(7.8=42.3)
A:
NO
C2:
PF0139113=Collagen=PU(19.0=39.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCTGTGAGATCCCAGGA
R:
GGAGGTCCTTGTTTCCCTGGA
Band lengths:
98-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]