DreEX0002966 @ danRer10
Exon Skipping
Gene
ENSDARG00000089078 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr21:32064461-32064985:-
Coord C1 exon
chr21:32064911-32064985
Coord A exon
chr21:32064615-32064650
Coord C2 exon
chr21:32064461-32064505
Length
36 bp
Sequences
Splice sites
3' ss Seq
TATTTTCCTCATATCAATAGGGG
3' ss Score
7.01
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTTTGCCTGGAGAAAAAGGAGCAACTGGATTCTCAGAAACTGATGATTTTGCTGTTCGTTTCAAAGCTCTGCAG
Seq A exon
GGGCCCCCAGGTCCTCCTGGAGAGCAAGGGCCAAAA
Seq C2 exon
GGAGAAATAGGGTTAAATGGAGCACCTGGACCTGAAGGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089078_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(17.7=44.0),PF0139113=Collagen=PU(4.2=12.0)
A:
PF0139113=Collagen=PU(16.2=91.7)
C2:
PF0139113=Collagen=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGGAGAAAAAGGAGCAA
R:
CTTTCCTTCAGGTCCAGGTGC
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]