DreEX0003169 @ danRer10
Exon Skipping
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13404616-13407618:+
Coord C1 exon
chr1:13404616-13404639
Coord A exon
chr1:13407005-13407013
Coord C2 exon
chr1:13407520-13407618
Length
9 bp
Sequences
Splice sites
3' ss Seq
AATCGCACCATGTCTGTCAGAAT
3' ss Score
2.52
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGATGGTCAACAGGACTACAGAG
Seq A exon
AATGGAAAG
Seq C2 exon
AGTGGCTTCACTCCTCTACATATTGCTGCTCATTATGGGAATGTAAATGTGGCCACGCTGCTGCTCAACAGAGGGGCTGCTGTAGACTTCACAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=0.333 C2=0.030
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(6.9=100)
A:
PF127962=Ank_2=FE(1.9=100)
C2:
PF127962=Ank_2=FE(31.7=100)
Main Inclusion Isoform:
ENSDART00000021693fB302
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGTCAACAGGACTACAGA
R:
CCCTCTGTTGAGCAGCAGC
Band lengths:
98-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]