DreINT0007769 @ danRer10
Intron Retention
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13404616-13407618:+
Coord C1 exon
chr1:13404616-13404639
Coord A exon
chr1:13404640-13407519
Coord C2 exon
chr1:13407520-13407618
Length
2880 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTA
5' ss Score
6.46
3' ss Seq
ACTATTCCACCGTGTATCAGAGT
3' ss Score
5.23
Exon sequences
Seq C1 exon
ATGATGGTCAACAGGACTACAGAG
Seq A exon
GTATTAAGACTCTCAGCAGAATCCTGCATTCGTCTCGGCTGTTATAAAGCCTAATGTGTTACTTAACACTGACAATTTCTCTTACATCGCATGGAGTCCTTATCAGTGTCGTAGCGCATGCCACATTGTTGTTTTTGTTTTATTAGTAGCCCCGTGTTTCCTCAAAAAAAAAAAAAAAAAAACCTATAGGGGTTTCTTGCTCATCAACACAATTATTTCAGTGAACATTTTGAGTAGGAATCAAGGTTTCTTGATCAAGGAACTTTATTTTTTAAATTATTTTGGCTCATTTTACAAGTCACCTAGAGTTCAATAGCTAAGTTTTACCATATTTGAATCCATTCAGCTGATCTCCATGTCTGGCTGGAGCACTTTTAGCATAGCTTAGCATCATTCATTGAATCAGATTAGACCATTAGCATCGCATTCAAAAATCTGTTTTTATTTTTCCTATTTTCTGAAGTTACATCTATGTAAGTATGACAGAAATGAAAAGTTAATATTTTCTAGGTTGATCATGGCCAGGATCTCTACTCTCATTCTGGATTAATAATCAAGGAACTTTGCTGCCGGACCATGAAATTAATTATTTTTAGATATTTATAAGTACAGTATGTGACTTTATTGCAAACACTTCCCAGGTTTTTCCAATGTTCCTGATGTTTTTACAGCTTCTTCCAGTTGACAGTCTCCGCACCAGCTTACCTGCGAACCATCAATAATGAAAAAGACCAGGATACATAAAGCAGGTTCATTCCCCATCTATATGCACACGTCACTGCCTTATTCAATGTAAAGTGGTTCACTGAGTACACTGGTTGAATTGTAGGCTCACACAGATCGACCCAACTATTGATCTGTAGTGTGATAGGTGTCATTCGGGTTTAGGCACTTCATCCCATGTATTCTAAACATGTTCAGCTCTTTCCTCATTTTGGGAGTGCAGTATTTCATACTCTCTTTCAGCCATTACTTCTATAAATATAGCACCGTCACCTATTATTGTTTGGTGAGATGCCTAATTATACAATACCCACTGACGTTTTAAACTTTGTGACTTTTCTTACATTGCTTGCTAGACTTGTAATTTTGTTAAACTGGAAGAGACCCTGGCCAGCCTCGCATGTACGATGGCTGAAAGATGTTCTGTATTTTGTGAAACTAGAGAAGATTAGAAACTCCCTTCAAAGACATAACAGAATGTTCTTAAAATCTGGAAGCCCTTTTTTCTTGTTAAAACTCTCCAGCTGTTTGACGCCAGTAGACTGGTGACCCATGCTCACAGCGACCCGAGTTCGATTCCCGGCTCAAGTTCCTTTGCAGATCCTATCCCCACTCTCTGCTTTCCATGAATTCCAGTCTCAACTCCCTAGTCCTGTATAATAAGGTTAAAAAAAATACTCTCCAGCTGGATCTAGACTGATCACCCTTGCTAGTTCTTAACAATAATAACACATCAGTTTGTAATCTTTTATTACTTGAATTGTAACTTTGAGTTTGTTGCATAAATGTAAATATCTGCCCCTCATTTACTTATGTAATTGGGTTTTATTTAATTTATTCATTCATTCATTCATTTTCTTGTTGGCTTAGTCCCTTTATTAATCCGGGGTCGCCACAGCGGAATGAACCACCAACTTATCCGGCAAGTTTTTACGCAGCGGATGCCCTTCCAGCCGCAACCCATCTCTGGGAAACATCCACACACACACTACGGACAATTTAGCCTACCCAATTCACCTGTACTGCATGTCTTTGGACTGTGAGGGAAACCGGAGCACCCGGAGGAAACCCACGCAAAGGCAGGGAGAACATGCAAACTCCACACAGAAACACCAACTGAGCCGAGGTTCGACCGAGCGACCTTCTTGCTGTGAGGCGACAGCACTACCTACTGCGCCACTGCCTCGCCCATTTTATTTGTTTGATTTACTTATATTTTTTAAGGCTTGTTTGTTTTATTTGTAATTTGTGAAATATAAAAATGCTTAAAAATCATTAAAAAAAAGAAAAATTAGTGAGATGCTAATGGTCTAATCCGATTCAATGATTTATGCTAAGCTAAGCTAAAAGTGCTCCTGCCAAACCTGGAGATCGGCTGATTGGCTTTTAAAAATGGTAAAACTGAACGGTTTAACTCAAGATGACTTTAAAAAAGAGCCTATTTACAAAAAAAAAAAAAAAAAAAAGCGGAGTGTTGCTTTAAGTAGGTTAAACACTTCTCATAATTTTACAAACAGACTGAACAGACGTACTGTAATTGTGCATGCAAACTCATTCTGTCACTCTTTGTAGAAGTCTCTCGGTCACATTTTGCTGCACCTTTTTGTTAACTGTGTTTTCTAAATCGCACCATGTCTGTCAGAATGGAAAGGTAAGAAAAAAGGCTCCATCAGACAAACTCAGTAAGACAGACAATGCCAATTTCCATTATACATTCATCTTTAGCAACATGTAGTAGTGAGTAGTTGATGAATCACATTTGTTTGTTCAGATATTTTTATTCATCATCCTTTTTTCTGTCATTGTCACTGAGAAACTTCTCATCTCTTTAACAAAGGCTCACTGGAATGTGCTCATATATTATTATCATACAAATATAATCTTTCGGTTTTTCCTTCCATTAACGTTTTTTTTCTCCCGTTCATTCACTCTAGTGCATGCTGATCCATTGGTAGCAGATGAGAATCCAGACATTTCTTTAACTTTTCCATTCTTTCTTTATTTTTTGCACAAATGTGATGGTTCATTGGAATGCTGCATGGTAGATCATTAAGGATGGATGTTTAAAATGAGATAGAAGATCTTTATATTTACTCTGTTTCTCTGTCTCTTGTTCTGTTCCTTGTTTTATCCTAAAACTATTCCACCGTGTATCAG
Seq C2 exon
AGTGGCTTCACTCCTCTACATATTGCTGCTCATTATGGGAATGTAAATGTGGCCACGCTGCTGCTCAACAGAGGGGCTGCTGTAGACTTCACAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026:ENSDART00000021693:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(6.9=100)
A:
NA
C2:
PF127962=Ank_2=FE(31.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]