DreEX0003174 @ danRer10
Exon Skipping
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13402872-13407618:+
Coord C1 exon
chr1:13402872-13403057
Coord A exon
chr1:13404616-13404639
Coord C2 exon
chr1:13407520-13407618
Length
24 bp
Sequences
Splice sites
3' ss Seq
CTCATGTGCGACTCTGTCAGATG
3' ss Score
5.06
5' ss Seq
GAGGTATTA
5' ss Score
6.46
Exon sequences
Seq C1 exon
GATGGCTTCACTCCTCTGGCCATTGCTCTCCAGCAGGGTCATAATCAGGTAGTTTCTCTGCTTCTTGAACACGACACGAAAGGGAAAGTCCGTCTGCCTGCACTCCACATAGCTGCCCGCAAGGATGACACCAAATCTGCTGCTCTGCTGCTCCAGAATGACCATAACGCTGATGTCCAGTCTAAG
Seq A exon
ATGATGGTCAACAGGACTACAGAG
Seq C2 exon
AGTGGCTTCACTCCTCTACATATTGCTGCTCATTATGGGAATGTAAATGTGGCCACGCTGCTGCTCAACAGAGGGGCTGCTGTAGACTTCACAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026_MULTIEX1-1/9=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.812 C2=0.030
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.9=50.0),PF127962=Ank_2=PU(26.7=43.5)
A:
PF127962=Ank_2=FE(6.9=100)
C2:
PF127962=Ank_2=FE(31.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAATCTGCTGCTCTGCTG
R:
GCGTGGCCACATTTACATTCC
Band lengths:
115-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]